Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans

Mixotrophy in nanoflagellates across environmental gradients in the ocean

(2019) Kyle F. Edwards   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small pigmented eukaryotes play a major role in carbon cycling in the P‐depleted western subtropical North Atlantic, which may be supported by mixotrophy

(2019) Solange Duhamel et al.   LIMNOLOGY AND OCEANOGRAPHY

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection

(2019) B. C. Kolody et al.   ISME Journal

Dictyochophyceae plastid genomes reveal unusual variability of their organization

(2019) Kwi Young Han et al.   JOURNAL OF PHYCOLOGY

Mixotrophic protists and a new paradigm for marine ecology: where does plankton research go now?

(2019) Kevin J Flynn et al.   JOURNAL OF PLANKTON RESEARCH

Contrasting mixotrophic lifestyles reveal different ecological niches in two closely related marine protists

(2019) Susanne Wilken et al.   JOURNAL OF PHYCOLOGY

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators

(2019) David M. Needham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The need to account for cell biology in characterizing predatory mixotrophs in aquatic environments

(2019) Susanne Wilken et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling

(2018) David M. Needham et al.   ISME Journal

Contrasting glacial meltwater effects on post-bloom phytoplankton on temporal and spatial scales in Kongsfjorden, Spitsbergen

(2018) Willem H. Van de Poll et al.   Elementa-Science of the Anthropocene

Quantitative biogeography of picoprasinophytes establishes ecotype distributions and significant contributions to marine phytoplankton

(2017) Alexander J. Limardo et al.   ENVIRONMENTAL MICROBIOLOGY

Climate Variability and Change: Response of a Coastal Ocean Ecosystem

(2017) Francisco Chavez et al.   OCEANOGRAPHY

Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than Thiamin

(2017) Magdalena A. Gutowska et al.   mBio

Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean

(2016) Melinda P. Simmons et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Presence, abundance and bacterivory of the mixotrophic algae Pseudopedinella (Dictyochophyceae) in freshwater environments

(2016) M Gerea et al.   AQUATIC MICROBIAL ECOLOGY

Hoarding and horizontal transfer led to an expanded gene and intron repertoire in the plastid genome of the diatom, Toxarium undulatum (Bacillariophyta)

(2016) Elizabeth C. Ruck et al.   CURRENT GENETICS

Indices based on silicoflagellate assemblages offer potential for paleo-reconstructions of the main oceanographic zones of the Southern Ocean

(2016) Andrés S. Rigual-Hernández et al.   GEO-MARINE LETTERS

Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton

(2016) Ryan W Paerl et al.   ISME Journal

Sinking phytoplankton associated with carbon flux in the Atlantic Ocean

(2016) Colleen A. Durkin et al.   LIMNOLOGY AND OCEANOGRAPHY

The Evolution of Silicon Transport in Eukaryotes

(2016) Alan O. Marron et al.   MOLECULAR BIOLOGY AND EVOLUTION

Marine mixotrophy increases trophic transfer efficiency, mean organism size, and vertical carbon flux

(2016) Ben A. Ward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

(2015) Sebastian Sudek et al.   ENVIRONMENTAL MICROBIOLOGY

metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

(2015) Johan Bengtsson-Palme et al.   Molecular Ecology Resources

Andersenia,a genus of filamentous, sand-dwelling Pelagophyceae from southeastern Australia

(2015) Richard Wetherbee et al.   PHYCOLOGIA

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

(2015) Tereza Ševčíková et al.   Scientific Reports

Recent mobility of plastid encoded group II introns and twintrons in five strains of the unicellular red algaPorphyridium

(2015) Marie-Mathilde Perrineau et al.   PeerJ

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

(2014) Chris L Dupont et al.   ISME Journal

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages

(2014) Darcy McRose et al.   ISME Journal

Microbial oceanography and the Hawaii Ocean Time-series programme

(2014) David M. Karl et al.   NATURE REVIEWS MICROBIOLOGY

Conserved Gene Order and Expanded Inverted Repeats Characterize Plastid Genomes of Thalassiosirales

(2014) Jamal S. M. Sabir et al.   PLoS One

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Two decades and counting: 24-years of sustained open ocean biogeochemical measurements in the Sargasso Sea

(2013) M.W. Lomas et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters

(2013) Fernando Unrein et al.   ISME Journal

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatial Variations in Microbial Community Composition in Surface Seawater from the Ultra-Oligotrophic Center to Rim of the South Pacific Gyre

(2013) Qi Yin et al.   PLoS One

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In situinteractions between photosynthetic picoeukaryotes and bacterioplankton in the Atlantic Ocean: evidence for mixotrophy

(2013) Manuela Hartmann et al.   Environmental Microbiology Reports

Global distribution of a wild alga revealed by targeted metagenomics

(2012) Alexandra Z. Worden et al.   CURRENT BIOLOGY

Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean

(2012) Elke Allers et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Chattonella globosa is a member of Dictyochophyceae: reassignment to Vicicitus gen. nov., based on molecular phylogeny, pigment composition, morphology and life history

(2012) F. Hoe Chang et al.   PHYCOLOGIA

Multiple B-vitamin depletion in large areas of the coastal ocean

(2012) S. A. Sanudo-Wilhelmy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mixotrophic basis of Atlantic oligotrophic ecosystems

(2012) M. Hartmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

(2011) Adam Monier et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids

(2011) Alexander H Treusch et al.   ISME Journal

Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus

(2011) Elif Demir-Hilton et al.   ISME Journal

Plastid 16S rRNA Gene Diversity among Eukaryotic Picophytoplankton Sorted by Flow Cytometry from the South Pacific Ocean

(2011) Xiao Li Shi et al.   PLoS One

Differential Distributions of Synechococcus Subgroups Across the California Current System

(2011) Ryan W. Paerl et al.   Frontiers in Microbiology

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

(2010) Rex R Malmstrom et al.   ISME Journal

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts

(2010) Dikla Man-Aharonovich et al.   ISME Journal

ANALYSES OF THE COMPLETE CHLOROPLAST GENOME SEQUENCES OF TWO MEMBERS OF THE PELAGOPHYCEAE: AUREOCOCCUS ANOPHAGEFFERENS CCMP1984 AND AUREOUMBRA LAGUNENSIS CCMP15071

(2010) Han Chuan Ong et al.   JOURNAL OF PHYCOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Ecosystem-specific selection pressures revealed through comparative population genomics

(2010) M. L. Coleman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

(2010) M. L. Cuvelier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Group II Introns: Mobile Ribozymes that Invade DNA

(2010) A. M. Lambowitz et al.   Cold Spring Harbor Perspectives in Biology

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters

(2008) Jorge Frias-Lopez et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS