Mapping of the contraction-induced phosphoproteome identifies TRIM28 as a significant regulator of skeletal muscle size and function

Molecular regulation of autophagy machinery by mTOR‐dependent and ‐independent pathways

(2020) Md. Abdul Alim Al‐Bari et al.   Annals of the New York Academy of Sciences

Resistance Exercise-Induced Hypertrophy

(2019) Riki Ogasawara et al.   EXERCISE AND SPORT SCIENCES REVIEWS

Critical role for TRIM28 and HP1β/γ in the epigenetic control of T cell metabolic reprograming and effector differentiation

(2019) Ulf Gehrmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of Parkin Impairs Mitochondrial Function and Leads to Muscle Atrophy

(2018) Nesibe Peker et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Rapamycin-insensitive mechanistic target of rapamycin regulates basal and resistance exercise–induced muscle protein synthesis

(2018) Riki Ogasawara et al.   FASEB JOURNAL

The role of raptor in the mechanical load-induced regulation of mTOR signaling, protein synthesis, and skeletal muscle hypertrophy

(2018) Jae-Sung You et al.   FASEB JOURNAL

Stimuli and sensors that initiate skeletal muscle hypertrophy following resistance exercise

(2018) Henning Wackerhage et al.   JOURNAL OF APPLIED PHYSIOLOGY

15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms

(2018) Peter V Hornbeck et al.   NUCLEIC ACIDS RESEARCH

A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions

(2017) Gregory K. Potts et al.   JOURNAL OF PHYSIOLOGY-LONDON

Biological functions of CDK5 and potential CDK5 targeted clinical treatments

(2017) Alison Shupp et al.   Oncotarget

mTOR as a Key Regulator in Maintaining Skeletal Muscle Mass

(2017) Mee-Sup Yoon   Frontiers in Physiology

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

Effects of Resistance Training Frequency on Measures of Muscle Hypertrophy: A Systematic Review and Meta-Analysis

(2016) Brad J. Schoenfeld et al.   SPORTS MEDICINE

MRF4 negatively regulates adult skeletal muscle growth by repressing MEF2 activity

(2016) Irene Moretti et al.   Nature Communications

TRIM28 multi-domain protein regulates cancer stem cell population in breast tumor development

(2016) Patrycja Czerwińska et al.   Oncotarget

Conserved regulators of Rag GTPases orchestrate amino acid-dependent TORC1 signaling

(2016) Katie Powis et al.   Cell Discovery

The role of mTOR signalling in the regulation of skeletal muscle mass in a rodent model of resistance exercise

(2016) Riki Ogasawara et al.   Scientific Reports

Degradation of AMPK by a Cancer-Specific Ubiquitin Ligase

(2015) Carlos T. Pineda et al.   CELL

Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates

(2015) Nolan J. Hoffman et al.   Cell Metabolism

Yes-Associated Protein is up-regulated by mechanical overload and is sufficient to induce skeletal muscle hypertrophy

(2015) Craig A. Goodman et al.   FEBS LETTERS

A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation

(2015) Kulwant Singh et al.   GENES & DEVELOPMENT

Rapamycin does not prevent increases in myofibrillar or mitochondrial protein synthesis following endurance exercise

(2015) Andrew Philp et al.   JOURNAL OF PHYSIOLOGY-LONDON

Acute resistance exercise activates rapamycin-sensitive and -insensitive mechanisms that control translational activity and capacity in skeletal muscle

(2015) Daniel W. D. West et al.   JOURNAL OF PHYSIOLOGY-LONDON

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

The Molecular Basis for Load-Induced Skeletal Muscle Hypertrophy

(2014) George R. Marcotte et al.   CALCIFIED TISSUE INTERNATIONAL

Alcohol impairs skeletal muscle protein synthesis and mTOR signaling in a time-dependent manner following electrically stimulated muscle contraction

(2014) Jennifer L. Steiner et al.   JOURNAL OF APPLIED PHYSIOLOGY

HDAC1 activates FoxO and is both sufficient and required for skeletal muscle atrophy

(2014) A. W. Beharry et al.   JOURNAL OF CELL SCIENCE

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

KinomeXplorer: an integrated platform for kinome biology studies

(2014) Heiko Horn et al.   NATURE METHODS

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

(2014) Peter V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions

(2014) Rikke Bøgebo et al.   PLoS One

Disuse-induced muscle wasting

(2013) Sue C. Bodine   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Krüppel-associated Box (KRAB)-associated Co-repressor (KAP-1) Ser-473 Phosphorylation Regulates Heterochromatin Protein 1β (HP1-β) Mobilization and DNA Repair in Heterochromatin

(2012) Emma Bolderson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanical Stimulation Induces mTOR Signaling via an ERK-Independent Mechanism: Implications for a Direct Activation of mTOR by Phosphatidic Acid

(2012) Jae Sung You et al.   PLoS One

KAP1 Protein: An Enigmatic Master Regulator of the Genome

(2011) Sushma Iyengar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The role of skeletal muscle mTOR in the regulation of mechanical load-induced growth

(2011) Craig A. Goodman et al.   JOURNAL OF PHYSIOLOGY-LONDON

Fiber Types in Mammalian Skeletal Muscles

(2011) Stefano Schiaffino et al.   PHYSIOLOGICAL REVIEWS

The muscle fiber type–fiber size paradox: hypertrophy or oxidative metabolism?

(2010) T. van Wessel et al.   EUROPEAN JOURNAL OF APPLIED PHYSIOLOGY

A Phosphatidylinositol 3-Kinase/Protein Kinase B-independent Activation of Mammalian Target of Rapamycin Signaling Is Sufficient to Induce Skeletal Muscle Hypertrophy

(2010) Craig A. Goodman et al.   MOLECULAR BIOLOGY OF THE CELL

Mitogen-activated protein kinase signaling is necessary for the maintenance of skeletal muscle mass

(2009) Hao Shi et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

The role of phosphoinositide 3-kinase and phosphatidic acid in the regulation of mammalian target of rapamycin following eccentric contractions

(2009) T. K. O’Neil et al.   JOURNAL OF PHYSIOLOGY-LONDON

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Inhibition of Atrogin-1/MAFbx Mediated MyoD Proteolysis Prevents Skeletal Muscle Atrophy In Vivo

(2009) Julie Lagirand-Cantaloube et al.   PLoS One

Fast/Glycolytic Muscle Fiber Growth Reduces Fat Mass and Improves Metabolic Parameters in Obese Mice

(2008) Yasuhiro Izumiya et al.   Cell Metabolism

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH