Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding

Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding

(2020) Mieke Heyde et al.   Molecular Ecology Resources

Fishing for mammals: Landscape‐level monitoring of terrestrial and semi‐aquatic communities using eDNA from riverine systems

(2020) Naiara Guimarães Sales et al.   JOURNAL OF APPLIED ECOLOGY

Field storage of water samples affects measured environmental DNA concentration and detection

(2020) Amanda N. Curtis et al.   LIMNOLOGY

Abalone Recruitment in Low-Density and Aggregated Populations Facing Climatic Stress

(2020) Leslie C. Hart et al.   JOURNAL OF SHELLFISH RESEARCH

Macroalgal forests and sea urchin barrens: Structural complexity loss, fisheries exploitation and catastrophic regime shifts

(2019) R. Melis et al.   Ecological Complexity

Rapid detection of macroalgal seed bank on cobbles: application of DNA metabarcoding using next-generation sequencing

(2019) Shingo Akita et al.   JOURNAL OF APPLIED PHYCOLOGY

Empowering conservation practice with efficient and economical genotyping from poor quality samples

(2019) Meghana Natesh et al.   Methods in Ecology and Evolution

Sponges as natural environmental DNA samplers

(2019) Stefano Mariani et al.   CURRENT BIOLOGY

Cobble community DNA as a tool to monitor patterns of biodiversity within kelp forest ecosystems

(2019) Peter Shum et al.   Molecular Ecology Resources

Population‐level inferences from environmental DNA—Current status and future perspectives

(2019) Eva Egelyng Sigsgaard et al.   Evolutionary Applications

Congruence between fine-scale genetic breaks and dispersal potential in an estuarine seaweed across multiple transition zones

(2019) Katy R Nicastro et al.   ICES JOURNAL OF MARINE SCIENCE

A practical guide to sample preservation and pre‐PCR processing of aquatic environmental DNA

(2019) Girish Kumar et al.   Molecular Ecology Resources

Marine heat wave and multiple stressors tip bull kelp forest to sea urchin barrens

(2019) L. Rogers-Bennett et al.   Scientific Reports

Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates

(2019) Alex Bush et al.   Frontiers in Ecology and Evolution

From metabarcoding to metaphylogeography: separating the wheat from the chaff

(2019) Xavier Turon et al.   ECOLOGICAL APPLICATIONS

Decimation by sea star wasting disease and rapid genetic change in a keystone species,Pisaster ochraceus

(2018) Lauren M. Schiebelhut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of genetic and phenotypic diversity of the giant kelp, Macrocystis pyrifera , to support breeding programs

(2018) Carolina Camus et al.   Algal Research-Biomass Biofuels and Bioproducts

Estimating intraspecific genetic diversity from community DNA metabarcoding data

(2018) Vasco Elbrecht et al.   PeerJ

DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

(2018) Owen S. Wangensteen et al.   PeerJ

Slippage of degenerate primers can cause variation in amplicon length

(2018) Vasco Elbrecht et al.   Scientific Reports

Water, water everywhere: environmental DNA can unlock population structure in elusive marine species

(2018) Kim M. Parsons et al.   Royal Society Open Science

How quantitative is metabarcoding: A meta‐analytical approach

(2018) Philip D. Lamb et al.   MOLECULAR ECOLOGY

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Phylogeography of two intertidal seaweeds, Gelidium lingulatum and G. rex (Rhodophyta: Gelidiales), along the South East Pacific: patterns explained by rafting dispersal?

(2017) Boris A. López et al.   MARINE BIOLOGY

Aggregations of brittle stars can perform similar ecological roles as mussel reefs

(2017) NR Geraldi et al.   MARINE ECOLOGY PROGRESS SERIES

Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding

(2017) Henrik Krehenwinkel et al.   Scientific Reports

Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding

(2017) Vasco Elbrecht et al.   Ecology and Evolution

Aggregations of brittle stars can perform similar ecological roles as mussel reefs

(2017) NR Geraldi et al.   MARINE ECOLOGY PROGRESS SERIES

Tracking Larval, Newly Settled, and Juvenile Red Abalone (Haliotis rufescens) Recruitment in Northern California

(2016) Laura Rogers-Bennett et al.   JOURNAL OF SHELLFISH RESEARCH

stratag: Anrpackage for manipulating, summarizing and analysing population genetic data

(2016) Frederick I. Archer et al.   Molecular Ecology Resources

Exploring Canadian Echinoderm Diversity through DNA Barcodes

(2016) Kara K. S. Layton et al.   PLoS One

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Formation of the Isthmus of Panama

(2016) A. ODea et al.   Science Advances

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Using genomics to characterize evolutionary potential for conservation of wild populations

(2014) Katherine A. Harrisson et al.   Evolutionary Applications

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Sea anemones possess dynamic mitogenome structures

(2014) Åse Emblem et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Dispersal potential and population genetic structure in the marine intertidal of the eastern North Pacific

(2013) Michael N. Dawson et al.   ECOLOGICAL MONOGRAPHS

Interactions between aggregations and environmental factors explain spatio-temporal patterns of the brittle-star Ophiothrix fragilis in the eastern Bay of Seine

(2013) Jean-Claude Dauvin et al.   ESTUARINE COASTAL AND SHELF SCIENCE

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Distribution pattern of benthic invertebrates in Danish estuaries: The use of Taylor's power law as a species-specific indicator of dispersion and behavior

(2012) Erik Kristensen et al.   JOURNAL OF SEA RESEARCH

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

(2011) WALTER SALZBURGER et al.   MOLECULAR ECOLOGY

An In silico approach for the evaluation of DNA barcodes

(2010) Gentile Ficetola et al.   BMC GENOMICS

DNA BARCODING AND GENETIC DIVERGENCE IN THE GIANT KELP MACROCYSTIS (LAMINARIALES)1

(2010) Erasmo C. Macaya et al.   JOURNAL OF PHYCOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genetic Structure Among 50 Species of the Northeastern Pacific Rocky Intertidal Community

(2010) Ryan P. Kelly et al.   PLoS One

Barcoding Life to Conserve Biological Diversity: Beyond the Taxonomic Imperative

(2010) Ronnie Vernooy et al.   PLOS BIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

NATURAL DISTRIBUTIONS OF MITOCHONDRIAL SEQUENCE DIVERSITY SUPPORT NEW NULL HYPOTHESES

(2009) John P. Wares   EVOLUTION

The ‘Expansion-Contraction’ model of Pleistocene biogeography: rocky shores suffer a sea change?

(2009) PETER B. MARKO et al.   MOLECULAR ECOLOGY

Biogeographical patterns of rocky intertidal communities along the Pacific coast of North America

(2008) Carol A. Blanchette et al.   JOURNAL OF BIOGEOGRAPHY