From metabarcoding to metaphylogeography: separating the wheat from the chaff
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
From metabarcoding to metaphylogeography: separating the wheat from the chaff
Authors
Keywords
-
Journal
ECOLOGICAL APPLICATIONS
Volume 30, Issue 2, Pages -
Publisher
Wiley
Online
2019-11-11
DOI
10.1002/eap.2036
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?
- (2019) Clare I.M. Adams et al. Genes
- Trends in DNA barcoding and metabarcoding
- (2019) Sarah J. Adamowicz et al. GENOME
- Under the canopy: Community-wide effects of invasive algae in Marine Protected Areas revealed by metabarcoding
- (2018) Owen S. Wangensteen et al. MARINE POLLUTION BULLETIN
- The choice of universal primers and the characteristics of the species mixture determine when DNA metabarcoding can be quantitative
- (2018) Josep Piñol et al. MOLECULAR ECOLOGY
- Molecular gut content analysis of different spider body parts
- (2018) Nuria Macías-Hernández et al. PLoS One
- Automated high throughput animal CO1 metabarcode classification
- (2018) Teresita M. Porter et al. Scientific Reports
- Estimating intraspecific genetic diversity from community DNA metabarcoding data
- (2018) Vasco Elbrecht et al. PeerJ
- DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
- (2018) Owen S. Wangensteen et al. PeerJ
- DNA from lake sediments reveals long-term ecosystem changes after a biological invasion
- (2018) Gentile Francesco Ficetola et al. Science Advances
- Why the COI barcode should be the community DNA metabarcode for the metazoa
- (2018) Carmelo Andújar et al. MOLECULAR ECOLOGY
- Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers
- (2018) Jan-Niklas Macher et al. Molecular Ecology Resources
- Over 2.5 million COI sequences in GenBank and growing
- (2018) Teresita M. Porter et al. PLoS One
- Slippage of degenerate primers can cause variation in amplicon length
- (2018) Vasco Elbrecht et al. Scientific Reports
- Systematic evaluation of error rates and causes in short samples in next-generation sequencing
- (2018) Franziska Pfeiffer et al. Scientific Reports
- Multi-marker metabarcoding approach to study mesozooplankton at basin scale
- (2018) Sergio Stefanni et al. Scientific Reports
- Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
- (2018) Babett Günther et al. Scientific Reports
- Water, water everywhere: environmental DNA can unlock population structure in elusive marine species
- (2018) Kim M. Parsons et al. Royal Society Open Science
- Bats as potential suppressors of multiple agricultural pests: A case study from Madagascar
- (2018) James Kemp et al. AGRICULTURE ECOSYSTEMS & ENVIRONMENT
- DNA metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist
- (2018) Andjin Siegenthaler et al. MOLECULAR ECOLOGY
- Metabarcoding Analyses Enable Differentiation of Both Interspecific Assemblages and Intraspecific Divergence in Habitats With Differing Management Practices
- (2017) Pedro M Pedro et al. ENVIRONMENTAL ENTOMOLOGY
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
- (2017) Kristy Deiner et al. MOLECULAR ECOLOGY
- Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
- (2017) Tobias Guldberg Frøslev et al. Nature Communications
- Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
- (2017) Michael Stat et al. Scientific Reports
- Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea
- (2017) Marta Pascual et al. PLoS One
- dbOTU3: A new implementation of distribution-based OTU calling
- (2017) Scott W. Olesen et al. PLoS One
- Are genetic databases sufficiently populated to detect non-indigenous species?
- (2016) Elizabeta Briski et al. BIOLOGICAL INVASIONS
- Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data
- (2016) Melanie Schirmer et al. BMC BIOINFORMATICS
- A world of sequences: can we use georeferenced nucleotide databases for a robust automated phylogeography?
- (2016) Paolo Gratton et al. JOURNAL OF BIOGEOGRAPHY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring
- (2016) Mehrdad Hajibabaei et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Censusing marine eukaryotic diversity in the twenty-first century
- (2016) Matthieu Leray et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The ecologist's field guide to sequence-based identification of biodiversity
- (2016) Simon Creer et al. Methods in Ecology and Evolution
- Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA
- (2016) Eva Egelyng Sigsgaard et al. Nature Ecology & Evolution
- Contrasted phylogeographic patterns on mitochondrial DNA of shallow and deep brittle stars across the Atlantic-Mediterranean area
- (2016) Sergi Taboada et al. Scientific Reports
- Molecular evolution of a widely-adopted taxonomic marker (COI) across the animal tree of life
- (2016) Mikko Pentinsaari et al. Scientific Reports
- Error filtering, pair assembly and error correction for next-generation sequencing reads
- (2015) Robert C. Edgar et al. BIOINFORMATICS
- The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infectingDaphnia
- (2015) E. González-Tortuero et al. Molecular Ecology Resources
- A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes
- (2015) Kimiko Uchii et al. Molecular Ecology Resources
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
- (2015) Matthieu Leray et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Swarm v2: highly-scalable and high-resolution amplicon clustering
- (2015) Frédéric Mahé et al. PeerJ
- Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities
- (2015) Dominique A. Cowart et al. PLoS One
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
- (2014) B. E. Deagle et al. Biology Letters
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- Drawing ecological inferences from coincident patterns of population- and community-level biodiversity
- (2014) Mark Vellend et al. MOLECULAR ECOLOGY
- Phylogeographic Structure in Benthic Marine Invertebrates of the Southeast Pacific Coast of Chile with Differing Dispersal Potential
- (2014) Pilar A. Haye et al. PLoS One
- Harnessing DNA to improve environmental management
- (2014) R. P. Kelly et al. SCIENCE
- Environmental DNA for wildlife biology and biodiversity monitoring
- (2014) Kristine Bohmann et al. TRENDS IN ECOLOGY & EVOLUTION
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
- (2013) Matthieu Leray et al. Frontiers in Zoology
- Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests
- (2013) Xavier Pochon et al. PLoS One
- Estimation of sequencing error rates in short reads
- (2012) Xin Victoria et al. BMC BIOINFORMATICS
- Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing
- (2012) DONALD J. BAIRD et al. MOLECULAR ECOLOGY
- The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
- (2012) C. Q. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cryptic speciation and genetic structure of widely distributed brittle stars (Ophiuroidea) in Europe
- (2012) Rocío Pérez-Portela et al. ZOOLOGICA SCRIPTA
- A wolf in sheep’s clothing: carnivory in dominant sea urchins in the Mediterranean
- (2011) OS Wangensteen et al. MARINE ECOLOGY PROGRESS SERIES
- Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities
- (2011) B. C. Emerson et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- pegas: an R package for population genetics with an integrated-modular approach
- (2010) E. Paradis BIOINFORMATICS
- It's About Time: Divergence, Demography, and the Evolution of Developmental Modes in Marine Invertebrates
- (2010) M. W. Hart et al. INTEGRATIVE AND COMPARATIVE BIOLOGY
- Phylogeography: retrospect and prospect
- (2008) John C. Avise JOURNAL OF BIOGEOGRAPHY
- Two markers and one history: phylogeography of the edible common sea urchin Paracentrotus lividus in the Lusitanian region
- (2008) I. Calderón et al. MARINE BIOLOGY
- Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
- (2008) H. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now