Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding

Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics

(2020) Paul G. Nevill et al.   Plant Methods

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods

(2019) Philip Francis Thomsen et al.   Ecology and Evolution

Invertebrate DNA metabarcoding reveals changes in communities across mine site restoration chronosequences

(2019) Kristen Fernandes et al.   RESTORATION ECOLOGY

DNA metabarcoding-a new approach to fauna monitoring in mine site restoration

(2018) Kristen Fernandes et al.   RESTORATION ECOLOGY

Environmental DNA metabarcoding studies are critically affected by substrate selection

(2018) Adam Koziol et al.   Molecular Ecology Resources

Factors governing extracellular DNA degradation dynamics in soil

(2018) Sara Hope Sirois et al.   Environmental Microbiology Reports

Present and future Köppen-Geiger climate classification maps at 1-km resolution

(2018) Hylke E. Beck et al.   Scientific Data

Scientific research on animal biodiversity is systematically biased towards vertebrates and temperate regions

(2017) Mark A. Titley et al.   PLoS One

Evaluating the efficacy of restoration plantings through DNA barcoding of frugivorous bird diets

(2016) A. Galimberti et al.   CONSERVATION BIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

(2016) Nicole A. Fahner et al.   PLoS One

DNA extraction from spider webs

(2016) Max Blake et al.   Conservation Genetics Resources

The ecologist's field guide to sequence-based identification of biodiversity

(2016) Simon Creer et al.   Methods in Ecology and Evolution

Climate-Related Local Extinctions Are Already Widespread among Plant and Animal Species

(2016) John J. Wiens   PLOS BIOLOGY

Using metabarcoding to reveal and quantify plant-pollinator interactions

(2016) André Pornon et al.   Scientific Reports

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach

(2015) Stéphane A. P. Derocles et al.   PLoS One

Accelerated dryland expansion under climate change

(2015) Jianping Huang et al.   Nature Climate Change

Evaluating a multigene environmental DNA approach for biodiversity assessment

(2015) Alexei J. Drummond et al.   GigaScience

From Benchtop to Desktop: Important Considerations when Designing Amplicon Sequencing Workflows

(2015) Dáithí C. Murray et al.   PLoS One

Molecular taxonomic tools provide more accurate estimates of species richness at less cost than traditional morphology-based taxonomic practices in a vegetation survey

(2014) Ken A. Thompson et al.   BIODIVERSITY AND CONSERVATION

Biogeography and speciation of terrestrial fauna in the south-western Australian biodiversity hotspot

(2014) Michael G. Rix et al.   BIOLOGICAL REVIEWS

Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator

(2014) Chenxue Yang et al.   ECOLOGICAL INDICATORS

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Efficient and sensitive identification and quantification of airborne pollen using next-generation DNA sequencing

(2014) Ken Kraaijeveld et al.   Molecular Ecology Resources

A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD

(2014) Lars Hendrich et al.   Molecular Ecology Resources

Defaunation in the Anthropocene

(2014) R. Dirzo et al.   SCIENCE

The biodiversity of species and their rates of extinction, distribution, and protection

(2014) S. L. Pimm et al.   SCIENCE

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Next generation restoration genetics: applications and opportunities

(2014) Anna V. Williams et al.   TRENDS IN PLANT SCIENCE

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

A multi-marker DNA barcoding approach to save time and resources in vegetation surveys

(2012) FABRIZIO DE MATTIA et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Optimal surveillance and eradication of invasive species in heterogeneous landscapes

(2012) Rebecca S. Epanchin-Niell et al.   ECOLOGY LETTERS

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

(2012) Dáithí C. Murray et al.   QUATERNARY SCIENCE REVIEWS

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Recovery Plan for the Endangered Taxonomy Profession

(2011) David L. Pearson et al.   BIOSCIENCE

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

(2011) Tiayyba Riaz et al.   NUCLEIC ACIDS RESEARCH

A new approach to an old conundrum-DNA barcoding sheds new light on phenotypic plasticity and morphological stasis in microsnails (Gastropoda, Pulmonata, Carychiidae)

(2010) ALEXANDER M. WEIGAND et al.   Molecular Ecology Resources

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

PHENOTYPIC PLASTICITY RECONCILES INCONGRUOUS MOLECULAR AND MORPHOLOGICAL TAXONOMIES: THE GIANT KELP, MACROCYSTIS (LAMINARIALES, PHAEOPHYCEAE), IS A MONOSPECIFIC GENUS1

(2009) Kyle W. Demes et al.   JOURNAL OF PHYCOLOGY

Re-integrating earthworm juveniles into soil biodiversity studies: species identification through DNA barcoding

(2009) B. RICHARD et al.   Molecular Ecology Resources

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

DNA barcoding insect-host plant associations

(2008) J. A Jurado-Rivera et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES