A practical guide to sample preservation and pre‐PCR processing of aquatic environmental DNA
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Title
A practical guide to sample preservation and pre‐PCR processing of aquatic environmental DNA
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2019-10-21
DOI
10.1111/1755-0998.13107
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- (2019) Toshiaki Jo et al. Ecology and Evolution
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- (2017) Hideyuki Doi et al. LIMNOLOGY AND OCEANOGRAPHY-METHODS
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- (2017) Robert M. Dorazio et al. Molecular Ecology Resources
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- (2017) Masayuki K. Sakata et al. NATURWISSENSCHAFTEN
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- (2017) Kelly E. Williams et al. PLoS One
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- (2011) Christopher L. Jerde et al. Conservation Letters
- The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011
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- The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems
- (2008) Marcel G. A. van der Heijden et al. ECOLOGY LETTERS
- A comparison of methods for total community DNA preservation and extraction from various thermal environments
- (2008) Kendra R. Mitchell et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
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