Precision of tissue patterning is controlled by dynamical properties of gene regulatory networks
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Title
Precision of tissue patterning is controlled by dynamical properties of gene regulatory networks
Authors
Keywords
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Journal
DEVELOPMENT
Volume 148, Issue 4, Pages dev197566
Publisher
The Company of Biologists
Online
2021-02-06
DOI
10.1242/dev.197566
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Note: Only part of the references are listed.- An adhesion code ensures robust pattern formation during tissue morphogenesis
- (2020) Tony Y.-C. Tsai et al. SCIENCE
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- (2019) Christina Paliou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2019) Albert Tsai et al. eLife
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- (2019) Berta Verd et al. eLife
- Establishing neuronal diversity in the spinal cord: a time and a place
- (2019) Andreas Sagner et al. DEVELOPMENT
- Coacting enhancers can have complementary functions within gene regulatory networks and promote canalization
- (2019) Leslie Dunipace et al. PLoS Genetics
- Cell Identity Switching Regulated by Retinoic Acid Signaling Maintains Homogeneous Segments in the Hindbrain
- (2018) Megan Addison et al. DEVELOPMENTAL CELL
- Minimum Action Path Theory Reveals the Details of Stochastic Transitions Out of Oscillatory States
- (2018) Roberto de la Cruz et al. PHYSICAL REVIEW LETTERS
- Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics
- (2018) Andreas Sagner et al. PLOS BIOLOGY
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Nervous System Regionalization Entails Axial Allocation before Neural Differentiation
- (2018) Vicki Metzis et al. CELL
- Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern
- (2018) Huy Tran et al. PLoS Computational Biology
- 3 minutes to precisely measure morphogen concentration
- (2018) Tanguy Lucas et al. PLoS Genetics
- Decoding of position in the developing neural tube from antiparallel morphogen gradients
- (2017) Marcin Zagorski et al. SCIENCE
- Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression
- (2017) Berta Verd et al. PLoS Computational Biology
- Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo
- (2016) Ezzat El-Sherif et al. CURRENT BIOLOGY
- Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks
- (2016) Enrico Cannavò et al. CURRENT BIOLOGY
- Neural Progenitors Adopt Specific Identities by Directly Repressing All Alternative Progenitor Transcriptional Programs
- (2016) Eva Kutejova et al. DEVELOPMENTAL CELL
- Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches
- (2016) Ruben Perez-Carrasco et al. PLoS Computational Biology
- Control of Transcript Variability in Single Mammalian Cells
- (2015) Nico Battich et al. CELL
- A local difference in Hedgehog signal transduction increases mechanical cell bond tension and biases cell intercalations along theDrosophilaanteroposterior compartment boundary
- (2015) Katrin Rudolf et al. DEVELOPMENT
- A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors
- (2015) Yuichi Nishi et al. DEVELOPMENT
- A theoretical framework for the regulation of Shh morphogen-controlled gene expression
- (2014) M. Cohen et al. DEVELOPMENT
- Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework
- (2014) G. Tka ik et al. GENETICS
- Robust and precise morphogen-mediated patterning: trade-offs, constraints and mechanisms
- (2014) W.-C. Lo et al. Journal of the Royal Society Interface
- Constructing the Energy Landscape for Genetic Switching System Driven by Intrinsic Noise
- (2014) Cheng Lv et al. PLoS One
- Coordination of progenitor specification and growth in mouse and chick spinal cord
- (2014) A. Kicheva et al. SCIENCE
- A unified design space of synthetic stripe-forming networks
- (2014) Yolanda Schaerli et al. Nature Communications
- In Vitro Generation of Neuromesodermal Progenitors Reveals Distinct Roles for Wnt Signalling in the Specification of Spinal Cord and Paraxial Mesoderm Identity
- (2014) Mina Gouti et al. PLOS BIOLOGY
- Specified Neural Progenitors Sort to Form Sharp Domains after Noisy Shh Signaling
- (2013) Fengzhu Xiong et al. CELL
- Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity
- (2013) Shawn C. Little et al. CELL
- Accurate measurements of dynamics and reproducibility in small genetic networks
- (2013) J. O. Dubuis et al. Molecular Systems Biology
- Genome engineering using the CRISPR-Cas9 system
- (2013) F Ann Ran et al. Nature Protocols
- Positional information, in bits
- (2013) J. O. Dubuis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube
- (2012) Nikolaos Balaskas et al. CELL
- Mechanistic Differences in the Transcriptional Interpretation of Local and Long-Range Shh Morphogen Signaling
- (2012) Tony Oosterveen et al. DEVELOPMENTAL CELL
- Large deviations in boundary-driven systems: Numerical evaluation and effective large-scale behavior
- (2012) Guy Bunin et al. EPL
- Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning
- (2012) K. A. Peterson et al. GENES & DEVELOPMENT
- Quasi-potential landscape in complex multi-stable systems
- (2012) J. X. Zhou et al. Journal of the Royal Society Interface
- A gene regulatory motif that generates oscillatory or multiway switch outputs
- (2012) J. Panovska-Griffiths et al. Journal of the Royal Society Interface
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Mechanisms of transcriptional precision in animal development
- (2012) Mounia Lagha et al. TRENDS IN GENETICS
- Interplay between gene expression noise and regulatory network architecture
- (2012) Guilhem Chalancon et al. TRENDS IN GENETICS
- Mutual Repression Enhances the Steepness and Precision of Gene Expression Boundaries
- (2012) Thomas R. Sokolowski et al. PLoS Computational Biology
- Cellular Decision Making and Biological Noise: From Microbes to Mammals
- (2011) Gábor Balázsi et al. CELL
- Motor Neurons and the Sense of Place
- (2011) Thomas M. Jessell et al. NEURON
- Quantifying the Waddington landscape and biological paths for development and differentiation
- (2011) J. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo
- (2011) M. W. Perry et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Shadow Enhancers Foster Robustness of Drosophila Gastrulation
- (2010) Michael W. Perry et al. CURRENT BIOLOGY
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- (2010) A. Holz et al. DEVELOPMENT
- Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives
- (2010) T. G. W. Graham et al. DEVELOPMENT
- An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients
- (2010) James Cotterell et al. Molecular Systems Biology
- Phenotypic robustness conferred by apparently redundant transcriptional enhancers
- (2010) Nicolás Frankel et al. NATURE
- Emerging properties of animal gene regulatory networks
- (2010) Eric H. Davidson NATURE
- Boundary formation and maintenance in tissue development
- (2010) Christian Dahmann et al. NATURE REVIEWS GENETICS
- Stem Cell States, Fates, and the Rules of Attraction
- (2009) Tariq Enver et al. Cell Stem Cell
- Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation
- (2009) Manu et al. PLOS BIOLOGY
- Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
- (2008) Arjun Raj et al. CELL
- Precision of the Dpp gradient
- (2008) T. Bollenbach et al. DEVELOPMENT
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