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Title
Mechanisms of Attenuation by Genetic Recoding of Viruses
Authors
Keywords
-
Journal
mBio
Volume 12, Issue 1, Pages -
Publisher
American Society for Microbiology
Online
2021-01-04
DOI
10.1128/mbio.02238-20
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Note: Only part of the references are listed.- A codon-pair deoptimized live-attenuated vaccine against respiratory syncytial virus is immunogenic and efficacious in non-human primates
- (2020) Steffen Mueller et al. VACCINE
- CpG Frequency in the 5′ Third of the env Gene Determines Sensitivity of Primary HIV-1 Strains to the Zinc-Finger Antiviral Protein
- (2020) Dorota Kmiec et al. mBio
- Plant Virus Genome Is Shaped by Specific Dinucleotide Restrictions That Influence Viral Infection
- (2020) Alfonso González de Prádena et al. mBio
- Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein
- (2020) Xiu Luo et al. Cell Reports
- Codon Usage and Splicing Jointly Influence mRNA Localization
- (2020) Christine Mordstein et al. Cell Systems
- Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L
- (2019) Alisha Chitrakar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SCAF4 and SCAF8, mRNA Anti-Terminator Proteins
- (2019) Lea H. Gregersen et al. CELL
- Enterovirus A71 Containing Codon-Deoptimized VP1 and High-Fidelity Polymerase as Next Generation Vaccine Candidate
- (2019) Yi-Hsuan Tsai et al. JOURNAL OF VIROLOGY
- Characterization of novel splice variants of zinc finger antiviral protein (ZAP)
- (2019) Melody M. H. Li et al. JOURNAL OF VIROLOGY
- Differential expression of human tRNA genes drives the abundance of tRNA-derived fragments
- (2019) Adrian Gabriel Torres et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Loss-of-Function Screens Reveal ABCE1 as an Essential Cellular Host Factor for Efficient Translation of Paramyxoviridae and Pneumoviridae
- (2019) Danielle E. Anderson et al. mBio
- ZAP’s stress granule localization is correlated with its antiviral activity and induced by virus replication
- (2019) Lok Man John Law et al. PLoS Pathogens
- The role of ZAP and OAS3/RNAseL pathways in the attenuation of an RNA virus with elevated frequencies of CpG and UpA dinucleotides
- (2019) Valerie Odon et al. NUCLEIC ACIDS RESEARCH
- KHNYN is essential for the zinc finger antiviral protein (ZAP) to restrict HIV-1 containing clustered CpG dinucleotides
- (2019) Mattia Ficarelli et al. eLife
- The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay
- (2019) Karole N D'Orazio et al. eLife
- Codon bias confers stability to human mRNA s
- (2019) Fabian Hia et al. EMBO REPORTS
- RNase L Reprograms Translation by Widespread mRNA Turnover Escaped by Antiviral mRNAs
- (2019) James M. Burke et al. MOLECULAR CELL
- Optimization of the codon-pair usage of human respiratory syncytial virus paradoxically resulted in reduced viral replication in vivo and reduced immunogenicity
- (2019) Cyril Le Nouën et al. JOURNAL OF VIROLOGY
- RNA-binding protein isoforms ZAP-S and ZAP-L have distinct antiviral and immune resolution functions
- (2019) Johannes Schwerk et al. NATURE IMMUNOLOGY
- Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies
- (2019) Miguel Angel Martínez et al. NUCLEIC ACIDS RESEARCH
- Structure of the zinc-finger antiviral protein in complex with RNA reveals a mechanism for selective targeting of CG-rich viral sequences
- (2019) Jennifer L. Meagher et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Activation of RNase L in Egyptian Rousette Bat-Derived RoNi/7 Cells Is Dependent Primarily on OAS3 and Independent of MAVS Signaling
- (2019) Yize Li et al. mBio
- Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts
- (2019) Petr Tesina et al. EMBO JOURNAL
- A functional investigation of the suppression of CpG and UpA dinucleotide frequencies in plant RNA virus genomes
- (2019) Ahmad Ibrahim et al. Scientific Reports
- HIV-1 Protease Evolvability is Affected by Synonymous Nucleotide Recoding
- (2018) Maria Nevot et al. JOURNAL OF VIROLOGY
- Zika Virus Attenuation by Codon Pair Deoptimization Induces Sterilizing Immunity in Mouse Models
- (2018) Penghui Li et al. JOURNAL OF VIROLOGY
- Attenuation of a very virulent Marek's disease herpesvirus (MDV) by codon pair bias deoptimization
- (2018) Kathrin Eschke et al. PLoS Pathogens
- A novel mechanism of RNase L inhibition: Theiler's virus L* protein prevents 2-5A from binding to RNase L
- (2018) Melissa Drappier et al. PLoS Pathogens
- Inhibition of Japanese encephalitis virus infection by the host zinc-finger antiviral protein
- (2018) Hsin-Ping Chiu et al. PLoS Pathogens
- TRIM25 Binds RNA to Modulate Cellular Anti-viral Defense
- (2018) Jacint G. Sanchez et al. JOURNAL OF MOLECULAR BIOLOGY
- Dom34 mediates targeting of exogenous RNA in the antiviral OAS/RNase L pathway
- (2018) Takuto Nogimori et al. NUCLEIC ACIDS RESEARCH
- Conservation of location of several specific inhibitory codon pairs in the Saccharomyces sensu stricto yeasts reveals translational selection
- (2018) Dalia H Ghoneim et al. NUCLEIC ACIDS RESEARCH
- Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes
- (2018) Simon A. Babayan et al. SCIENCE
- Evolution of Codon Usage Bias in Henipaviruses Is Governed by Natural Selection and Is Host-Specific
- (2018) Naveen Kumar et al. Viruses-Basel
- TRIM25 Is Required for the Antiviral Activity of Zinc Finger Antiviral Protein
- (2017) Xiaojiao Zheng et al. JOURNAL OF VIROLOGY
- Ribosome Collision Is Critical for Quality Control during No-Go Decay
- (2017) Carrie L. Simms et al. MOLECULAR CELL
- CG dinucleotide suppression enables antiviral defence targeting non-self RNA
- (2017) Matthew A. Takata et al. NATURE
- Genetic stability of genome-scale deoptimized RNA virus vaccine candidates under selective pressure
- (2017) Cyril Le Nouën et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Limits of variation, specific infectivity, and genome packaging of massively recoded poliovirus genomes
- (2017) Yutong Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Development of live-attenuated arenavirus vaccines based on codon deoptimization of the viral glycoprotein
- (2017) Benson Y.H. Cheng et al. VIROLOGY
- Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses
- (2017) Andrew E. Shaw et al. PLOS BIOLOGY
- TRIM25 Enhances the Antiviral Action of Zinc-Finger Antiviral Protein (ZAP)
- (2017) Melody M. H. Li et al. PLoS Pathogens
- CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry
- (2017) Jelke Jan Fros et al. eLife
- Attenuation of RNA viruses by redirecting their evolution in sequence space
- (2017) Gonzalo Moratorio et al. Nature Microbiology
- Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast
- (2016) Caitlin E. Gamble et al. CELL
- Functional role of TRIM E3 ligase oligomerization and regulation of catalytic activity
- (2016) Marios G Koliopoulos et al. EMBO JOURNAL
- Sindbis Virus Can Exploit a Host Antiviral Protein To Evade Immune Surveillance
- (2016) Xinlu Wang et al. JOURNAL OF VIROLOGY
- Evolution of DNA Methylation across Insects
- (2016) Adam J. Bewick et al. MOLECULAR BIOLOGY AND EVOLUTION
- Activation of RNase L is dependent on OAS3 expression during infection with diverse human viruses
- (2016) Yize Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Synonymous Virus Genome Recoding as a Tool to Impact Viral Fitness
- (2016) Miguel Angel Martínez et al. TRENDS IN MICROBIOLOGY
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- (2016) Alessandro Cinti et al. mBio
- Comprehensive DNA methylation analysis of the Aedes aegypti genome
- (2016) Cassandra Falckenhayn et al. Scientific Reports
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- (2016) Jacint G. Sanchez et al. Cell Reports
- Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection
- (2016) Eleanor Gaunt et al. eLife
- Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts
- (2016) Hongju Wang et al. PLoS One
- Codon optimization of the adenoviral fiber negatively impacts structural protein expression and viral fitness
- (2016) Eneko Villanueva et al. Scientific Reports
- Widespread signatures of local mRNA folding structure selection in four Dengue virus serotypes
- (2015) Eli Goz et al. BMC GENOMICS
- RNase L Activates the NLRP3 Inflammasome during Viral Infections
- (2015) Arindam Chakrabarti et al. Cell Host & Microbe
- Sabin Vaccine Reversion in the Field: a Comprehensive Analysis of Sabin-Like Poliovirus Isolates in Nigeria
- (2015) Michael Famulare et al. JOURNAL OF VIROLOGY
- Generation of Live Attenuated Influenza Virus by Using Codon Usage Bias
- (2015) Rebecca L. Y. Fan et al. JOURNAL OF VIROLOGY
- Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference
- (2015) Sam H. Shen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural mechanism of sensing long dsRNA via a noncatalytic domain in human oligoadenylate synthetase 3
- (2015) Jesse Donovan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Activation Mechanism of 2′-5′-Oligoadenylate Synthetase Gives New Insights Into OAS/cGAS Triggers of Innate Immunity
- (2015) Jan Lohöfener et al. STRUCTURE
- The Zinc-Finger Antiviral Protein ZAP Inhibits LINE and Alu Retrotransposition
- (2015) John B. Moldovan et al. PLoS Genetics
- The Broad-Spectrum Antiviral Protein ZAP Restricts Human Retrotransposition
- (2015) John L. Goodier et al. PLoS Genetics
- RNase L Targets Distinct Sites in Influenza A Virus RNAs
- (2014) Daphne A. Cooper et al. JOURNAL OF VIROLOGY
- Influenza A Virus Attenuation by Codon Deoptimization of the NS Gene for Vaccine Development
- (2014) A. Nogales et al. JOURNAL OF VIROLOGY
- Ribonuclease L and metal-ion–independent endoribonuclease cleavage sites in host and viral RNAs
- (2014) Daphne A. Cooper et al. NUCLEIC ACIDS RESEARCH
- Attenuation of human respiratory syncytial virus by genome-scale codon-pair deoptimization
- (2014) C. Le Nouen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The tripartite motif coiled-coil is an elongated antiparallel hairpin dimer
- (2014) J. G. Sanchez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PARP13 regulates cellular mRNA post-transcriptionally and functions as a pro-apoptotic factor by destabilizing TRAILR4 transcript
- (2014) Tanya Todorova et al. Nature Communications
- RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies
- (2014) Fiona Tulloch et al. eLife
- Modelling mutational and selection pressures on dinucleotides in eukaryotic phyla –selection against CpG and UpA in cytoplasmically expressed RNA and in RNA viruses
- (2013) Peter Simmonds et al. BMC GENOMICS
- tRNA gene copy number variation in humans
- (2013) James R. Iben et al. GENE
- Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1
- (2013) J. Donovan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Prenylome profiling reveals S-farnesylation is crucial for membrane targeting and antiviral activity of ZAP long-isoform
- (2013) G. Charron et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Zinc-finger antiviral protein mediates retinoic acid inducible gene I-like receptor-independent antiviral response to murine leukemia virus
- (2013) H. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture
- (2013) Gloria Martrus et al. Retrovirology
- Inhibition of Hepatitis B Virus Replication by the Host Zinc Finger Antiviral Protein
- (2013) Richeng Mao et al. PLoS Pathogens
- Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus
- (2012) Adam S. Lauring et al. Cell Host & Microbe
- Weak 5′-mRNA Secondary Structures in Short Eukaryotic Genes
- (2012) Yang Ding et al. Genome Biology and Evolution
- Structure of N-terminal domain of ZAP indicates how a zinc-finger protein recognizes complex RNA
- (2012) Shoudeng Chen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses
- (2011) Tong Zhou et al. BMC EVOLUTIONARY BIOLOGY
- Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells
- (2011) S. Jimenez-Baranda et al. JOURNAL OF VIROLOGY
- Structure of the no-go mRNA decay complex Dom34–Hbs1 bound to a stalled 80S ribosome
- (2011) Thomas Becker et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- An Evolutionarily Conserved Mechanism for Controlling the Efficiency of Protein Translation
- (2010) Tamir Tuller et al. CELL
- A Role for Codon Order in Translation Dynamics
- (2010) Gina Cannarozzi et al. CELL
- Structure and Function of Mammalian DNA Methyltransferases
- (2010) Renata Zofia Jurkowska et al. CHEMBIOCHEM
- Viral Induction of the Zinc Finger Antiviral Protein Is IRF3-dependent but NF-κB-independent
- (2010) Nan Wang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Live attenuated influenza virus vaccines by computer-aided rational design
- (2010) Steffen Mueller et al. NATURE BIOTECHNOLOGY
- ZAPS is a potent stimulator of signaling mediated by the RNA helicase RIG-I during antiviral responses
- (2010) Sumio Hayakawa et al. NATURE IMMUNOLOGY
- Synonymous but not the same: the causes and consequences of codon bias
- (2010) Joshua B. Plotkin et al. NATURE REVIEWS GENETICS
- Mutagenesis analysis of the zinc-finger antiviral protein
- (2010) Xinlu Wang et al. Retrovirology
- RNase L releases a small RNA from HCV RNA that refolds into a potent PAMP
- (2010) K. Malathi et al. RNA
- A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes
- (2010) Wanjun Gu et al. PLoS Computational Biology
- Distinct Antiviral Roles for Human 2',5'-Oligoadenylate Synthetase Family Members against Dengue Virus Infection
- (2009) R.-J. Lin et al. JOURNAL OF IMMUNOLOGY
- Virus Attenuation by Genome-Scale Changes in Codon Pair Bias
- (2008) J. R. Coleman et al. SCIENCE
- Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses
- (2008) Benjamin D. Greenbaum et al. PLoS Pathogens
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