Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture

The role of mutational robustness in RNA virus evolution

(2013) Adam S. Lauring et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptional and Posttranscriptional Regulation of HIV-1 Gene Expression

(2013) J. Karn et al.   Cold Spring Harbor Perspectives in Medicine

Codon Usage Determines the Mutational Robustness, Evolutionary Capacity, and Virulence of an RNA Virus

(2012) Adam S. Lauring et al.   Cell Host & Microbe

Evolution of the human immunodeficiency virus type 1 protease: effects on viral replication capacity and protease robustness

(2012) E. Capel et al.   JOURNAL OF GENERAL VIROLOGY

Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11

(2012) Manqing Li et al.   NATURE

Identification of two functionally redundant RNA elements in the coding sequence of poliovirus using computer-generated design

(2012) Y. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus

(2012) Antoinette C van der Kuyl et al.   Retrovirology

Thymidine Analogue Excision and Discrimination Modulated by Mutational Complexes Including Single Amino Acid Deletions of Asp-67 or Thr-69 in HIV-1 Reverse Transcriptase

(2011) Mónica Kisic et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA Interference as a Tool for Exploring HIV-1 Robustness

(2011) Maria Nevot et al.   JOURNAL OF MOLECULAR BIOLOGY

The Fitness Effects of Synonymous Mutations in DNA and RNA Viruses

(2011) José M. Cuevas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Computationally designed adeno-associated virus (AAV) Rep 78 is efficiently maintained within an adenovirus vector

(2011) V. Sitaraman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A detailed comparative analysis on the overall codon usage patterns in Hepatitis A virus

(2011) Lucía D’ Andrea et al.   VIRUS RESEARCH

Mechanisms Involved in the Selection of HIV-1 Reverse Transcriptase Thumb Subdomain Polymorphisms Associated with Nucleoside Analogue Therapy Failure

(2010) G. Betancor et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The different pathways of HIV genomic RNA translation

(2010) Nathalie Chamond et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Interplay between RNA Structure and Protein Evolution in HIV-1

(2010) R. Sanjuan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Live attenuated influenza virus vaccines by computer-aided rational design

(2010) Steffen Mueller et al.   NATURE BIOTECHNOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

HLA-Associated Alterations in Replication Capacity of Chimeric NL4-3 Viruses Carrying gag-protease from Elite Controllers of Human Immunodeficiency Virus Type 1

(2008) T. Miura et al.   JOURNAL OF VIROLOGY

The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA

(2008) C. P. Keating et al.   NUCLEIC ACIDS RESEARCH

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

(2008) J. R. Coleman et al.   SCIENCE

HIV-1 reverse transcriptase inhibitor resistance mutations and fitness: A view from the clinic and ex vivo

(2008) Javier Martinez-Picado et al.   VIRUS RESEARCH