Genomic vulnerability to rapid climate warming in a tree species with a long generation time

Disentangling the effects of geographic peripherality and habitat suitability on neutral and adaptive genetic variation in Swiss stone pine

(2020) Benjamin Dauphin et al.   MOLECULAR ECOLOGY

The Importance of Genetic Redundancy in Evolution

(2020) Áki J. Láruson et al.   TRENDS IN ECOLOGY & EVOLUTION

Species better track climate warming in the oceans than on land

(2020) Jonathan Lenoir et al.   Nature Ecology & Evolution

Nemo‐age: spatially explicit simulations of eco‐evolutionary dynamics in stage‐structured populations under changing environments

(2020) Olivier Cotto et al.   Methods in Ecology and Evolution

High-resolution monthly precipitation and temperature time series from 2006 to 2100

(2020) Dirk Nikolaus Karger et al.   Scientific Data

LFMM 2: Fast and accurate inference of gene-environment associations in genome-wide studies

(2019) Kevin Caye et al.   MOLECULAR BIOLOGY AND EVOLUTION

Range‐wide variation in local adaptation and phenotypic plasticity of fitness‐related traits in Fagus sylvatica and their implications under climate change

(2019) Homero Gárate‐Escamilla et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Genomic assessment of local adaptation in dwarf birch to inform assisted gene flow

(2019) James S. Borrell et al.   Evolutionary Applications

Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow

(2019) Luke Browne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extinction debts and colonization credits of non-forest plants in the European Alps

(2019) Sabine B. Rumpf et al.   Nature Communications

Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution

(2018) Katalin Csilléry et al.   MOLECULAR ECOLOGY

Strong phenotypic plasticity limits potential for evolutionary responses to climate change

(2018) Vicencio Oostra et al.   Nature Communications

Measuring Genetic Differentiation from Pool-seq Data

(2018) Valentin Hivert et al.   GENETICS

Accelerated increase in plant species richness on mountain summits is linked to warming

(2018) Manuel J. Steinbauer et al.   NATURE

New insights into adaptation and population structure of cork oak using genotyping by sequencing

(2018) Francisco Pina‐Martins et al.   GLOBAL CHANGE BIOLOGY

The International Tree-Ring Data Bank (ITRDB) revisited: Data availability and global ecological representativity

(2018) Shoudong Zhao et al.   JOURNAL OF BIOGEOGRAPHY

Using transcriptome sequencing and pooled exome capture to study local adaptation in the giga-genome of Pinus cembra

(2018) Christian Rellstab et al.   Molecular Ecology Resources

Long-distance pollen dispersal during recent colonization favors a rapid but partial recovery of genetic diversity in Picea sitchensis

(2018) Joane S. Elleouet et al.   NEW PHYTOLOGIST

Biotic interactions and seed deposition rather than abiotic factors determine recruitment at elevational range limits of an alpine tree

(2017) Eike Lena Neuschulz et al.   JOURNAL OF ECOLOGY

Evidence of genomic adaptation to climate in Eucalyptus microcarpa : Implications for adaptive potential to projected climate change

(2017) Rebecca Jordan et al.   MOLECULAR ECOLOGY

Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA

(2017) Brandon M. Lind et al.   MOLECULAR ECOLOGY

A dynamic eco-evolutionary model predicts slow response of alpine plants to climate warming

(2017) Olivier Cotto et al.   Nature Communications

Climatologies at high resolution for the earth’s land surface areas

(2017) Dirk Nikolaus Karger et al.   Scientific Data

missMDA: A Package for Handling Missing Values in Multivariate Data Analysis

(2016) Julie Josse et al.   Journal of Statistical Software

Signatures of local adaptation in candidate genes of oaks (Quercusspp.) with respect to present and future climatic conditions

(2016) Christian Rellstab et al.   MOLECULAR ECOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping-by-sequencing data from natural populations

(2016) Garrett J. McKinney et al.   Molecular Ecology Resources

The broad footprint of climate change from genes to biomes to people

(2016) Brett R. Scheffers et al.   SCIENCE

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Genetic Adaptation to Climate in White Spruce Involves Small to Moderate Allele Frequency Shifts in Functionally Diverse Genes

(2015) Benjamin Hornoy et al.   Genome Biology and Evolution

Long series of Swiss seasonal precipitation: regionalization, trends and influence of large-scale flow

(2015) Simon C. Scherrer et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

A Representative Democracy to Reduce Interdependency in a Multimodel Ensemble

(2015) Benjamin M. Sanderson et al.   JOURNAL OF CLIMATE

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Novel competitors shape species’ responses to climate change

(2015) Jake M. Alexander et al.   NATURE

Very high-resolution digital elevation models: are multi-scale derived variables ecologically relevant?

(2015) Kevin Leempoel et al.   Methods in Ecology and Evolution

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Predicted responses of arctic and alpine ecosystems to altered seasonality under climate change

(2014) Jessica G Ernakovich et al.   GLOBAL CHANGE BIOLOGY

ThecompadrePlant Matrix Database: an open online repository for plant demography

(2014) Roberto Salguero-Gómez et al.   JOURNAL OF ECOLOGY

Lagging adaptation to warming climate in Arabidopsis thaliana

(2014) A. M. Wilczek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sap flow characteristics and whole-tree water use of Pinus cembra across the treeline ecotone of the central Tyrolean Alps

(2013) Gerhard Wieser et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

A new high resolution absolute temperature grid for the Greater Alpine Region back to 1780

(2012) Barbara Chimani et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Rapid climate change and the rate of adaptation: insight from experimental quantitative genetics

(2012) Ruth G. Shaw et al.   NEW PHYTOLOGIST

Recent Plant Diversity Changes on Europe's Mountain Summits

(2012) H. Pauli et al.   SCIENCE

Reduced fitness at early life stages in peripheral versus core populations of Swiss stone pine (Pinus cembra) is not reflected by levels of inbreeding in seed families

(2012) Kristina Salzer et al.   Alpine Botany

Rapid Range Shifts of Species Associated with High Levels of Climate Warming

(2011) I.-C. Chen et al.   SCIENCE

Examination of change factor methodologies for climate change impact assessment

(2011) Aavudai Anandhi et al.   WATER RESOURCES RESEARCH

Annual variation in predation and dispersal of Arolla pine (Pinus cembra L.) seeds by Eurasian red squirrels and other seed-eaters

(2010) Cheng Zong et al.   FOREST ECOLOGY AND MANAGEMENT

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Adaptive Value and Costs of Physiological Plasticity to Soil Moisture Limitation in Recombinant Inbred Lines of Avena barbata

(2009) Hafiz Maherali et al.   AMERICAN NATURALIST

Effects of climate variables on intra-annual stem radial increment in Pinus cembra (L.) along the alpine treeline ecotone

(2009) Andreas Gruber et al.   ANNALS OF FOREST SCIENCE

Gradual decline in genetic diversity in Swiss stone pine populations (Pinus cembra) across Switzerland suggests postglacial re-colonization into the Alps from a common eastern glacial refugium

(2009) Felix Gugerli et al.   BOTANICA HELVETICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Effects of Climate and Land-Use Change on the Establishment and Growth of Cembran Pine (Pinus cembra L.) over the Altitudinal Treeline Ecotone in the Central Swiss Alps

(2008) Pascal Vittoz et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

Spatial structure along an altitudinal gradient in the Italian central Alps suggests competition and facilitation among coniferous species

(2008) Emanuele Lingua et al.   JOURNAL OF VEGETATION SCIENCE