Strong phenotypic plasticity limits potential for evolutionary responses to climate change

Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats

(2017) Taylor C. Gibbons et al.   MOLECULAR ECOLOGY

What Can Plasticity Contribute to Insect Responses to Climate Change?

(2016) Carla M. Sgrò et al.   Annual Review of Entomology

The adaptive potential of subtropical rainbowfish in the face of climate change: heritability and heritable plasticity for the expression of candidate genes

(2016) R. J. Scott McCairns et al.   Evolutionary Applications

Phenological sensitivity to climate across taxa and trophic levels

(2016) Stephen J. Thackeray et al.   NATURE

Predicting evolutionary rescue via evolving plasticity in stochastic environments

(2016) Jaime Ashander et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improving the forecast for biodiversity under climate change

(2016) M. C. Urban et al.   SCIENCE

Transcriptome-Wide Differential Gene Expression inBicyclus anynanaButterflies: Female Vision-Related Genes Are More Plastic

(2015) Aide Macias-Muñoz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

Babelomics 5.0: functional interpretation for new generations of genomic data

(2015) Roberto Alonso et al.   NUCLEIC ACIDS RESEARCH

Temperature Stress Mediates Decanalization and Dominance of Gene Expression in Drosophila melanogaster

(2015) Jun Chen et al.   PLoS Genetics

Differential Expression of Ecdysone Receptor Leads to Variation in Phenotypic Plasticity across Serial Homologs

(2015) Antónia Monteiro et al.   PLoS Genetics

Ecdysteroid Hormones Link the Juvenile Environment to Alternative Adult Life Histories in a Seasonal Insect

(2014) Vicencio Oostra et al.   AMERICAN NATURALIST

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches

(2014) B. E. Suzek et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability

(2014) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

The nutritionally responsive transcriptome of the polyphenic beetle Onthophagus taurus and the importance of sexual dimorphism and body region

(2014) T. Kijimoto et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

On the fate of seasonally plastic traits in a rainforest butterfly under relaxed selection

(2014) Vicencio Oostra et al.   Ecology and Evolution

The Predictive Adaptive Response: Modeling the Life-History Evolution of the Butterfly Bicyclus anynana in Seasonal Environments

(2013) Joost van den Heuvel et al.   AMERICAN NATURALIST

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Climate change and timing of avian breeding and migration: evolutionary versus plastic changes

(2013) Anne Charmantier et al.   Evolutionary Applications

Updated high-resolution grids of monthly climatic observations - the CRU TS3.10 Dataset

(2013) I. Harris et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

(2012) Marco Falda et al.   BMC BIOINFORMATICS

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

(2012) Andrea Hodgins-Davis et al.   Genome Biology and Evolution

Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome

(2012) M. Carneiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temperature treatments during larval development reveal extensive heritable and plastic variation in gene expression and life history traits

(2012) JOUNI KVIST et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Evolution and molecular mechanisms of adaptive developmental plasticity

(2011) PATRÍCIA BELDADE et al.   MOLECULAR ECOLOGY

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Developmental Plasticity in Sexual Roles of Butterfly Species Drives Mutual Sexual Ornamentation

(2011) K. L. Prudic et al.   SCIENCE

Predictive Adaptive Responses: Condition‐Dependent Impact of Adult Nutrition and Flight in the Tropical Butterfly Bicyclus anynana

(2010) Marjo Saastamoinen et al.   AMERICAN NATURALIST

Geographic variation in thermal plasticity of life history and wing pattern in Bicyclus anynana

(2010) MA de Jong et al.   CLIMATE RESEARCH

Translating environmental gradients into discontinuous reaction norms via hormone signalling in a polyphenic butterfly

(2010) V. Oostra et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phenotypic plasticity and population viability: the importance of environmental predictability

(2010) T. E. Reed et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory

(2010) Luis-Miguel Chevin et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation

(2009) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Direct mapping and alignment of protein sequences onto genomic sequence

(2008) Osamu Gotoh   BIOINFORMATICS

Keeping up with a warming world; assessing the rate of adaptation to climate change

(2008) M. E Visser   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Increased Life Span in a Polyphenic Butterfly Artificially Selected for Starvation Resistance

(2007) Jeroen Pijpe et al.   AMERICAN NATURALIST