Evidence of genomic adaptation to climate in Eucalyptus microcarpa : Implications for adaptive potential to projected climate change

Genomic Scans across Three Eucalypts Suggest that Adaptation to Aridity is a Genome-Wide Phenomenon

(2017) Dorothy A. Steane et al.   Genome Biology and Evolution

The ACCESS coupled model: description, control climate and evaluation

(2017) D Bi et al.   Australian Meteorological and Oceanographic Journal

A skill score based evaluation of simulated Australian climate

(2017) I Watterson et al.   Australian Meteorological and Oceanographic Journal

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata

(2016) V. L. Sork et al.   AMERICAN JOURNAL OF BOTANY

Unpacking the mechanisms captured by a correlative species distribution model to improve predictions of climate refugia

(2016) Natalie J. Briscoe et al.   GLOBAL CHANGE BIOLOGY

Signatures of local adaptation in candidate genes of oaks (Quercusspp.) with respect to present and future climatic conditions

(2016) Christian Rellstab et al.   MOLECULAR ECOLOGY

Finding needles in a genomic haystack: targeted capture identifies clear signatures of selection in a nonmodel plant species

(2016) Matthew J. Christmas et al.   MOLECULAR ECOLOGY

Landscape genomics reveals altered genome wide diversity within revegetated stands ofEucalyptus microcarpa(Grey Box)

(2016) Rebecca Jordan et al.   NEW PHYTOLOGIST

SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana

(2016) Zhishuo Wang et al.   PLANT MOLECULAR BIOLOGY

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Genome-Wide Association Study for Nine Plant Architecture Traits in Sorghum

(2016) Jing Zhao et al.   Plant Genome

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Single-Locus versus Multilocus Patterns of Local Adaptation to Climate in Eastern White Pine (Pinus strobus, Pinaceae)

(2016) Om P. Rajora et al.   PLoS One

Climatic and photoperiodic effects on flowering phenology of select eucalypts from south-eastern Australia

(2015) Deepa S. Rawal et al.   AGRICULTURAL AND FOREST METEOROLOGY

Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

(2015) Scott P. Egan et al.   ECOLOGY LETTERS

Time to get moving: assisted gene flow of forest trees

(2015) Sally N. Aitken et al.   Evolutionary Applications

Genetic Adaptation to Climate in White Spruce Involves Small to Moderate Allele Frequency Shifts in Functionally Diverse Genes

(2015) Benjamin Hornoy et al.   Genome Biology and Evolution

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Evidence for extensive parallelism but divergent genomic architecture of adaptation along altitudinal and latitudinal gradients inPopulus trichocarpa

(2015) Jason A. Holliday et al.   NEW PHYTOLOGIST

Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history ofEucalyptus grandis

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

Genetic basis of transcriptome diversity inDrosophila melanogaster

(2015) Wen Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive plasticity and epigenetic variation in response to warming in an Alpine plant

(2015) Adrienne B. Nicotra et al.   Ecology and Evolution

A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species

(2015) Shosei Kubota et al.   PLoS Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Environmental effects on germination phenology of co-occurring eucalypts: implications for regeneration under climate change

(2014) Deepa S. Rawal et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Genome-wide scans detect adaptation to aridity in a widespread forest tree species

(2014) Dorothy A. Steane et al.   MOLECULAR ECOLOGY

Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree speciesAlnus glutinosa

(2014) Hanne De Kort et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

The genome of Eucalyptus grandis

(2014) Alexander A. Myburg et al.   NATURE

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

RNA-Seq Using Two Populations Reveals Genes and Alleles Controlling Wood Traits and Growth in Eucalyptus nitens

(2014) Saravanan Thavamanikumar et al.   PLoS One

Characterisation of Adaptive Genetic Diversity in Environmentally Contrasted Populations of Eucalyptus camaldulensis Dehnh. (River Red Gum)

(2014) Shannon Dillon et al.   PLoS One

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

Genetic divergence in forest trees: understanding the consequences of climate change

(2013) Antoine Kremer et al.   FUNCTIONAL ECOLOGY

The Evolutionary Genetics of the Genes Underlying Phenotypic Associations for Loblolly Pine (Pinus taeda, Pinaceae)

(2013) A. J. Eckert et al.   GENETICS

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Potential for evolutionary responses to climate change - evidence from tree populations

(2013) Florian J. Alberto et al.   GLOBAL CHANGE BIOLOGY

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Geographical and environmental gradients shape phenotypic trait variation and genetic structure inPopulus trichocarpa

(2013) Athena D. McKown et al.   NEW PHYTOLOGIST

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

(2013) V. L. Sork et al.   Tree Genetics & Genomes

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

Which provenance and where? Seed sourcing strategies for revegetation in a changing environment

(2012) Martin F. Breed et al.   CONSERVATION GENETICS

Long-distance gene flow and adaptation of forest trees to rapid climate change

(2012) Antoine Kremer et al.   ECOLOGY LETTERS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Assessing the benefits and risks of translocations in changing environments: a genetic perspective

(2011) Andrew R. Weeks et al.   Evolutionary Applications

The GFDL CM3 Coupled Climate Model: Characteristics of the Ocean and Sea Ice Simulations

(2011) Stephen M. Griffies et al.   JOURNAL OF CLIMATE

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

Arabidopsis Female Gametophyte Gene Expression Map Reveals Similarities between Plant and Animal Gametes

(2010) Samuel E. Wuest et al.   CURRENT BIOLOGY

Wavelet characterization of eucalypt flowering and the influence of climate

(2010) I. L. Hudson et al.   ENVIRONMENTAL AND ECOLOGICAL STATISTICS

Building evolutionary resilience for conserving biodiversity under climate change

(2010) Carla M. Sgrò et al.   Evolutionary Applications

Increased mortality can promote evolutionary adaptation of forest trees to climate change

(2010) Anna Kuparinen et al.   FOREST ECOLOGY AND MANAGEMENT

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)

(2010) ANDREW J. ECKERT et al.   MOLECULAR ECOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect

(2009) Stéphanie Manel et al.   BMC EVOLUTIONARY BIOLOGY

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Adaptation, migration or extirpation: climate change outcomes for tree populations

(2008) Sally N. Aitken et al.   Evolutionary Applications

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses

(2008) PRAGYA KANT et al.   PLANT CELL AND ENVIRONMENT

A Meta-Analysis of Local Adaptation in Plants

(2008) Roosa Leimu et al.   PLoS One

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION