In Silico Analyses of Autophagy-Related Genes in Rapeseed (Brassica napus L.) under Different Abiotic Stresses and in Various Tissues

Genomic Characterization and Expressional Profiles of Autophagy-Related Genes (ATGs) in Oilseed Crop Castor Bean (Ricinus communis L.)

(2020) Bing Han et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Boosting autophagy in sexual reproduction: a plant perspective

(2020) Shanshan Li et al.   NEW PHYTOLOGIST

Autophagy: An Intracellular Degradation Pathway Regulating Plant Survival and Stress Response

(2020) Tong Su et al.   Frontiers in Plant Science

Comprehensive Analysis of Autophagy-Related Genes in Sweet Orange (Citrus sinensis) Highlights Their Roles in Response to Abiotic Stresses

(2020) Xing-Zheng Fu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Multiple Functions of ATG8 Family Proteins in Plant Autophagy

(2020) Fan Bu et al.   Frontiers in Cell and Developmental Biology

The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression

(2019) Chunlai Wu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Identification and Expression Analysis of GA2ox, GA3ox, and GA20ox Are Related to Gibberellin Oxidase Genes in Grape (Vitis Vinifera L.)

(2019) He et al.   Genes

Autophagy-mediated Nutrient Recycling and Regulation in Plants: A Molecular View

(2019) Md. Saiful Islam et al.   JOURNAL OF PLANT BIOLOGY

Transcriptome analysis reveals genes commonly responding to multiple abiotic stresses in rapeseed

(2019) Yuting Zhang et al.   MOLECULAR BREEDING

miR824/AGAMOUS-LIKE16 Module Integrates Recurring Environmental Heat Stress Changes to Fine-Tune Poststress Development

(2019) Henrik Mihály Szaker et al.   Frontiers in Plant Science

Autophagy controls resource allocation and protein storage accumulation in Arabidopsis seeds

(2018) Julien Di Berardino et al.   JOURNAL OF EXPERIMENTAL BOTANY

Autophagy-related approaches for improving nutrient use efficiency and crop yield protection

(2018) Tamar Avin-Wittenberg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional stimulation of rate-limiting components of the autophagic pathway improves plant fitness

(2018) Elena A Minina et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide sequence and expressional analysis of autophagy Gene family in bread wheat ( Triticum aestivum L.)

(2018) Wenjie Yue et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide analysis of autophagy-related genes (ARGs) in grapevine and plant tolerance to copper stress

(2018) Lingfei Shangguan et al.   PLANTA

Autophagy in crop plants: what's new beyond Arabidopsis ?

(2018) Jie Tang et al.   Open Biology

Genome wide identification of microRNAs involved in fatty acid and lipid metabolism of Brassica napus by small RNA and degradome sequencing

(2017) Zhiwei Wang et al.   GENE

Genome-wide analysis of autophagy-related genes in banana highlights MaATG8s in cell death and autophagy in immune response to Fusarium wilt

(2017) Yunxie Wei et al.   PLANT CELL REPORTS

Apple autophagy-related protein MdATG3s afford tolerance to multiple abiotic stresses

(2017) Ping Wang et al.   PLANT SCIENCE

Autophagy Is Rapidly Induced by Salt Stress and Is Required for Salt Tolerance in Arabidopsis

(2017) Liming Luo et al.   Frontiers in Plant Science

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

(2016) Daniel J Klionsky et al.   Autophagy

Genome-wide analysis of autophagy-associated genes in foxtail millet (Setaria italica L.) and characterization of the function of SiATG8a in conferring tolerance to nitrogen starvation in rice

(2016) Weiwei Li et al.   BMC GENOMICS

An overview of macroautophagy in yeast

(2016) Xin Wen et al.   JOURNAL OF MOLECULAR BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

F-box genes: Genome-wide expansion, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri)

(2016) Guo-Ming Wang et al.   PLANT SCIENCE

Identification of microRNAs Actively Involved in Fatty Acid Biosynthesis in Developing Brassica napus Seeds Using High-Throughput Sequencing

(2016) Jia Wang et al.   Frontiers in Plant Science

Autophagy, a Conserved Mechanism for Protein Degradation, Responds to Heat, and Other Abiotic Stresses in Capsicum annuum L.

(2016) Yufei Zhai et al.   Frontiers in Plant Science

Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses

(2016) Hongju Jian et al.   Frontiers in Plant Science

Identification of Barley (Hordeum vulgare L.) Autophagy Genes and Their Expression Levels during Leaf Senescence, Chronic Nitrogen Limitation and in Response to Dark Exposure

(2016) Liliana Avila-Ospina et al.   Agronomy-Basel

Autophagy contributes to regulation of the hypoxia response during submergence inArabidopsis thaliana

(2015) Liang Chen et al.   Autophagy

Overexpression of the autophagy-related gene SiATG8a from foxtail millet (Setaria italica L.) confers tolerance to both nitrogen starvation and drought stress in Arabidopsis

(2015) Wei-wei Li et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A comprehensive, genome-wide analysis of autophagy-related genes identified in tobacco suggests a central role of autophagy in plant response to various environmental cues

(2015) Xue-mei Zhou et al.   DNA RESEARCH

Autophagic Recycling Plays a Central Role in Maize Nitrogen Remobilization

(2015) Faqiang Li et al.   PLANT CELL

Functional Characterization of Maize C2H2 Zinc-Finger Gene Family

(2015) Kaifa Wei et al.   PLANT MOLECULAR BIOLOGY REPORTER

Autophagy Supports Biomass Production and Nitrogen Use Efficiency at the Vegetative Stage in Rice

(2015) Shinya Wada et al.   PLANT PHYSIOLOGY

Evolution Analysis of Simple Sequence Repeats in Plant Genome

(2015) Zhen Qin et al.   PLoS One

OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development

(2014) Takamitsu Kurusu et al.   Autophagy

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Atg8 family: multifunctional ubiquitin-like key regulators of autophagy

(2013) Moran Rawet Slobodkin et al.   Essays in Biochemistry

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Deciphering Small Noncoding RNAs during the Transition from Dormant Embryo to Germinated Embryo in Larches (Larix leptolepis)

(2013) Junhong Zhang et al.   PLoS One

Microsatellites as Targets of Natural Selection

(2012) R. J. Haasl et al.   MOLECULAR BIOLOGY AND EVOLUTION

Autophagy machinery controls nitrogen remobilization at the whole-plant level under both limiting and ample nitrate conditions in Arabidopsis

(2012) Anne Guiboileau et al.   NEW PHYTOLOGIST

ExPASy: SIB bioinformatics resource portal

(2012) P. Artimo et al.   NUCLEIC ACIDS RESEARCH

Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response

(2012) Duygu Kuzuoglu-Ozturk et al.   PLANTA

Heterologous Expression of ATG8c from Soybean Confers Tolerance to Nitrogen Deficiency and Increases Yield in Arabidopsis

(2012) Tongmei Xia et al.   PLoS One

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Autophagy: a multifaceted intracellular system for bulk and selective recycling

(2012) Faqiang Li et al.   TRENDS IN PLANT SCIENCE

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs

(2012) Adrian M. Altenhoff et al.   PLoS Computational Biology

NAC transcription factors in plant abiotic stress responses

(2011) Kazuo Nakashima et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Microautophagy: lesser-known self-eating

(2011) Wen-wen Li et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Genome-Wide Identification, Classification, and Expression Analysis of Autophagy-Associated Gene Homologues in Rice (Oryza sativa L.)

(2011) K. Xia et al.   DNA RESEARCH

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

Role of plant autophagy in stress response

(2011) Shaojie Han et al.   Protein & Cell

Determination of EMC isotherms and appropriate mathematical models for canola

(2010) Ali Zomorodian et al.   FOOD AND BIOPRODUCTS PROCESSING

MicroRNA Gene Regulation Cascades During Early Stages of Plant Development

(2010) Hiroyuki Nonogaki   PLANT AND CELL PHYSIOLOGY

Autophagy is required for tolerance of drought and salt stress in plants

(2009) Yimo Liu et al.   Autophagy

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice

(2009) Jun-Hye Shin et al.   MOLECULES AND CELLS

Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing

(2009) B. D. Pant et al.   PLANT PHYSIOLOGY

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Improved phytoremediation of oilseed rape (Brassica napus) by Trichoderma mutant constructed by restriction enzyme-mediated integration (REMI) in cadmium polluted soil

(2008) Bing Wang et al.   CHEMOSPHERE

An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses

(2008) Silvia Slavikova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cadmium uptake potential of Brassica napus cocropped with Brassica parachinensis and Zea mays

(2008) Ammaiyappan Selvam et al.   JOURNAL OF HAZARDOUS MATERIALS

The ATG Autophagic Conjugation System in Maize: ATG Transcripts and Abundance of the ATG8-Lipid Adduct Are Regulated by Development and Nutrient Availability

(2008) T. Chung et al.   PLANT PHYSIOLOGY

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana

(2008) H.-H. Liu et al.   RNA