miR824/AGAMOUS-LIKE16 Module Integrates Recurring Environmental Heat Stress Changes to Fine-Tune Poststress Development

An H3K27me3 demethylase-HSFA2 regulatory loop orchestrates transgenerational thermomemory in Arabidopsis

(2019) Junzhong Liu et al.   CELL RESEARCH

Thermopriming triggers splicing memory in Arabidopsis

(2018) Yu Ling et al.   JOURNAL OF EXPERIMENTAL BOTANY

The nonstop decay and the RNA silencing systems operate cooperatively in plants

(2018) István Szádeczky-Kardoss et al.   NUCLEIC ACIDS RESEARCH

Ambient temperature regulates the expression of a small set of sRNAs influencing plant development through NF-YA2 and YUC2

(2018) Péter Gyula et al.   PLANT CELL AND ENVIRONMENT

Distinct heat shock factors and chromatin modifications mediate the organ-autonomous transcriptional memory of heat stress

(2018) Hsiang-chin Liu et al.   PLANT JOURNAL

TheMicroRNA390/TRANS-ACTING SHORT INTERFERING RNA3Module Mediates Lateral Root Growth under Salt Stress via the Auxin Pathway

(2018) Fu He et al.   PLANT PHYSIOLOGY

Absence of warmth permits epigenetic memory of winter in Arabidopsis

(2018) Jo Hepworth et al.   Nature Communications

MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis

(2018) Jeng-Shane Lin et al.   Frontiers in Plant Science

Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence

(2018) Dezhi Wu et al.   Molecular Plant

Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars

(2017) Satendra K. Mangrauthia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrated genome browser: visual analytics platform for genomics

(2016) Nowlan H. Freese et al.   BIOINFORMATICS

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity

(2016) Chen Chen et al.   PLANT PHYSIOLOGY

The heat-stress factor HSFA6b connects ABA signaling and ABA-mediated heat responses

(2016) Ya-Chen Huang et al.   PLANT PHYSIOLOGY

Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling

(2016) Krzysztof Brzezinka et al.   eLife

The Importance of Ambient Temperature to Growth and the Induction of Flowering

(2016) C. R. McClung et al.   Frontiers in Plant Science

Genome-wide identification and characterization of MADS-box family genes related to organ development and stress resistance in Brassica rapa

(2015) Gopal Saha et al.   BMC GENOMICS

Mechanisms of microRNA turnover

(2015) Maryam Sanei et al.   CURRENT OPINION IN PLANT BIOLOGY

A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

(2015) J. La mke et al.   EMBO JOURNAL

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Phylogenomics reveals surprising sets of essential and dispensable clades of MIKCc-group MADS-box genes in flowering plants

(2015) Lydia Gramzow et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PlantDHS: a database for DNase I hypersensitive sites in plants

(2015) Tao Zhang et al.   NUCLEIC ACIDS RESEARCH

Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana

(2015) Rémy Merret et al.   NUCLEIC ACIDS RESEARCH

SKI2 mediates degradation of RISC 5′-cleavage fragments and prevents secondary siRNA production from miRNA targets inArabidopsis

(2015) Anja Branscheid et al.   NUCLEIC ACIDS RESEARCH

miR408is involved in abiotic stress responses in Arabidopsis

(2015) Chao Ma et al.   PLANT JOURNAL

Transcriptome-wide analysis of chromium-stress responsive microRNAs to explore miRNA-mediated regulatory networks in radish (Raphanus sativus L.)

(2015) Wei Liu et al.   Scientific Reports

Identification of bolting-related microRNAs and their targets reveals complex miRNA-mediated flowering-time regulatory networks in radish (Raphanus sativus L.)

(2015) Shanshan Nie et al.   Scientific Reports

The elucidation of stress memory inheritance in Brassica rapa plants

(2015) Andriy Bilichak et al.   Frontiers in Plant Science

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

(2015) Maria Barciszewska-Pacak et al.   Frontiers in Plant Science

Role of MicroRNAs in Biotic and Abiotic Stress Responses in Crop Plants

(2014) Rajesh Kumar   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Flowering responses to seasonal cues: what's new?

(2014) Maida Romera-Branchat et al.   CURRENT OPINION IN PLANT BIOLOGY

Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.)

(2014) Ranjeet Ranjan Kumar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley

(2014) Katarzyna Kruszka et al.   JOURNAL OF EXPERIMENTAL BOTANY

Control of flowering by ambient temperature

(2014) G. Capovilla et al.   JOURNAL OF EXPERIMENTAL BOTANY

A new loss-of-function allele28yreveals a role ofARGONAUTE1in limiting asymmetric division of stomatal lineage ground cell

(2014) Kezhen Yang et al.   Journal of Integrative Plant Biology

miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis

(2014) J.-Y. Hu et al.   PLANT CELL

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

ThemiR156-SPL9-DFRpathway coordinates the relationship between development and abiotic stress tolerance in plants

(2014) Long-Gang Cui et al.   PLANT JOURNAL

The MADS-Domain Factors AGAMOUS-LIKE15 and AGAMOUS-LIKE18, along with SHORT VEGETATIVE PHASE and AGAMOUS-LIKE24, Are Necessary to Block Floral Gene Expression during the Vegetative Phase

(2014) D. E. Fernandez et al.   PLANT PHYSIOLOGY

AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization

(2014) Tibor Csorba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex

(2013) Felix Halbach et al.   CELL

Evolutionary conservation of microRNA regulatory programs in plant flower development

(2013) Yan Luo et al.   DEVELOPMENTAL BIOLOGY

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Functional characterization ofArabidopsis HsfA6a as a heat-shock transcription factor under high salinity and dehydration conditions

(2013) SUNG MIN HWANG et al.   PLANT CELL AND ENVIRONMENT

Heat stress induction ofmiR398triggers a regulatory loop that is critical for thermotolerance in Arabidopsis

(2013) Qingmei Guan et al.   PLANT JOURNAL

Common and Distinct Functions of Arabidopsis Class A1 and A2 Heat Shock Factors in Diverse Abiotic Stress Responses and Development

(2013) H.-c. Liu et al.   PLANT PHYSIOLOGY

Interplay between Heat Shock Proteins HSP101 and HSA32 Prolongs Heat Acclimation Memory Posttranscriptionally in Arabidopsis

(2013) T.-y. Wu et al.   PLANT PHYSIOLOGY

XRN4 and LARP1 Are Required for a Heat-Triggered mRNA Decay Pathway Involved in Plant Acclimation and Survival during Thermal Stress

(2013) Rémy Merret et al.   Cell Reports

miRNAs mediate SnRK1-dependent energy signaling in Arabidopsis

(2013) Ana Confraria et al.   Frontiers in Plant Science

Identification of Cassava MicroRNAs under Abiotic Stress

(2013) Carolina Ballén-Taborda et al.   International Journal of Genomics

Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies

(2012) C. Smaczniak et al.   DEVELOPMENT

miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis

(2012) Colette A. Matthewman et al.   FEBS LETTERS

Genome-wide identification and expression analysis of heat-responsive and novel microRNAs in Populus tomentosa

(2012) Lei Chen et al.   GENE

Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis

(2012) Zhen Tao et al.   PLANT JOURNAL

Some like it hot, some like it warm: Phenotyping to explore thermotolerance diversity

(2012) Ching-Hui Yeh et al.   PLANT SCIENCE

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa

(2011) Xiang Yu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression

(2011) Takumi Yoshida et al.   MOLECULAR GENETICS AND GENOMICS

A Polycomb-based switch underlying quantitative epigenetic memory

(2011) Andrew Angel et al.   NATURE

Analysis of microRNA turnover in mammalian cells following Dicer1 ablation

(2011) Michael P. Gantier et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

HsfA1d and HsfA1e Involved in the Transcriptional Regulation of HsfA2 Function as Key Regulators for the Hsf Signaling Network in Response to Environmental Stress

(2011) Ayako Nishizawa-Yokoi et al.   PLANT AND CELL PHYSIOLOGY

The FRIGIDA Complex Activates Transcription ofFLC, a Strong Flowering Repressor inArabidopsis, by Recruiting Chromatin Modification Factors

(2011) Kyuha Choi et al.   PLANT CELL

The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis

(2011) HSIANG-CHIN LIU et al.   PLANT CELL AND ENVIRONMENT

FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis

(2011) W. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA networks and developmental plasticity in plants

(2011) Ignacio Rubio-Somoza et al.   TRENDS IN PLANT SCIENCE

MADS-box gene evolution beyond flowers: expression in pollen, endosperm, guard cells, roots and trichomes

(2010) Elena R. Alvarez-Buylla et al.   PLANT JOURNAL

Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1

(2010) Tibor Csorba et al.   PLANT JOURNAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs

(2009) David Meiri et al.   PLANT JOURNAL

FRIGIDA Delays Flowering in Arabidopsis via a Cotranscriptional Mechanism Involving Direct Interaction with the Nuclear Cap-Binding Complex

(2009) N. Geraldo et al.   PLANT PHYSIOLOGY

A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development

(2008) Brian D. Gregory et al.   DEVELOPMENTAL CELL

Structurally different alleles of the ath-MIR824microRNA precursor are maintained at high frequency inArabidopsis thaliana

(2008) Juliette de Meaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Translational Inhibition by Plant miRNAs and siRNAs

(2008) P. Brodersen et al.   SCIENCE

Control of Jasmonate Biosynthesis and Senescence by miR319 Targets

(2008) Carla Schommer et al.   PLOS BIOLOGY