Comparative study of neighboring Holm oak and olive trees-belowground microbial communities subjected to different soil management

Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive

(2020) Antonio J. Fernández-González et al.   Microbiome

The Transcriptome of Verticillium dahliae Responds Differentially Depending on the Disease Susceptibility Level of the Olive (Olea europaea L.) Cultivar

(2019) Jaime Jiménez-Ruiz et al.   Genes

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

(2019) Pierre Plassart et al.   Scientific Reports

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection

(2019) Antonio J. Fernández-González et al.   Scientific Reports

Mechanisms by which organic fertilizer and effective microbes mitigate peanut continuous cropping yield constraints in a red soil of south China

(2018) Wei Chen et al.   APPLIED SOIL ECOLOGY

SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses

(2018) Tomáš Větrovský et al.   BIOINFORMATICS

Soil amendment alters soil physicochemical properties and bacterial community structure of a replanted apple orchard

(2018) Bowen Liang et al.   MICROBIOLOGICAL RESEARCH

Indigenous Pseudomonas spp. Strains from the Olive (Olea europaea L.) Rhizosphere as Effective Biocontrol Agents against Verticillium dahliae: From the Host Roots to the Bacterial Genomes

(2018) Carmen Gómez-Lama Cabanás et al.   Frontiers in Microbiology

Belowground Microbiota and the Health of Tree Crops

(2018) Jesús Mercado-Blanco et al.   Frontiers in Microbiology

Starch Hydrolysis and Vessel Occlusion Related to Wilt Symptoms in Olive Stems of Susceptible Cultivars Infected by Verticillium dahliae

(2018) Carlos Trapero et al.   Frontiers in Plant Science

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Eighteen-Year Farming Management Moderately Shapes the Soil Microbial Community Structure but Promotes Habitat-Specific Taxa

(2018) Huaihai Chen et al.   Frontiers in Microbiology

Organic fertilizer, but not heavy liming, enhances banana biomass, increases soil organic carbon and modifies soil microbiota

(2018) Jiangzhou Zhang et al.   APPLIED SOIL ECOLOGY

Impact of Bactrocera oleae on the fungal microbiota of ripe olive drupes

(2018) Ahmed Abdelfattah et al.   PLoS One

Differential sensitivity of total and active soil microbial communities to drought and forest management

(2017) Felipe Bastida et al.   GLOBAL CHANGE BIOLOGY

Tolerance of olive (Olea europaea ) cv Frantoio to Verticillium dahliae relies on both basal and pathogen-induced differential transcriptomic responses

(2017) María de la O Leyva-Pérez et al.   NEW PHYTOLOGIST

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils

(2017) Antonio J. Fernández-González et al.   Scientific Reports

Comparative analysis of bacterial community structure in the rhizosphere of maize by high-throughput pyrosequencing

(2017) Yi Yang et al.   PLoS One

Changes in the soil bacterial community along a pedogenic gradient

(2017) Manuel Sánchez-Marañón et al.   Scientific Reports

Fungal endophyte communities in above- and belowground olive tree organs and the effect of season and geographic location on their structures

(2016) Fátima Martins et al.   Fungal Ecology

Bacterial Communities in the Rhizosphere of Amilaceous Maize (Zea mays L.) as Assessed by Pyrosequencing

(2016) David Correa-Galeote et al.   Frontiers in Plant Science

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

(2016) S. Uroz et al.   Scientific Reports

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

Metagenomic Assessment of the Potential Microbial Nitrogen Pathways in the Rhizosphere of a Mediterranean Forest After a Wildfire

(2015) José F. Cobo-Díaz et al.   MICROBIAL ECOLOGY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Over 150 Years of Long-Term Fertilization Alters Spatial Scaling of Microbial Biodiversity

(2015) Yuting Liang et al.   mBio

Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees

(2015) Henry Müller et al.   Frontiers in Microbiology

Influence of Edaphic, Climatic, and Agronomic Factors on the Composition and Abundance of Nitrifying Microorganisms in the Rhizosphere of Commercial Olive Crops

(2015) Joan Caliz et al.   PLoS One

Metabarcoding Analysis of Fungal Diversity in the Phyllosphere and Carposphere of Olive (Olea europaea)

(2015) Ahmed Abdelfattah et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Functional diversification within bacterial lineages promotes wide functional overlapping between taxonomic groups in a Mediterranean forest soil

(2014) Jorge Curiel Yuste et al.   FEMS MICROBIOLOGY ECOLOGY

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

(2014) Fabiana S. Paula et al.   MOLECULAR ECOLOGY

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region

(2014) Annamaria Bevivino et al.   PLoS One

Soil factors involved in the diversity and structure of soil bacterial communities in commercial organic olive orchards in Southern Spain

(2014) B. B. Landa et al.   Environmental Microbiology Reports

The Historical Development and Nutritional Importance of Olive and Olive Oil Constituted an Important Part of the Mediterranean Diet

(2013) Vildan Uylaşer et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Temporal variability in soil microbial communities across land-use types

(2013) Christian L Lauber et al.   ISME Journal

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Vegetation, soil and hydrology management influence denitrification activity and the composition of nirK-type denitrifier communities in a newly afforested riparian buffer

(2013) Bruno Boz et al.   New Biotechnology

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Soil Microbial Community Structure Influenced by Agricultural Management Practices in a Mediterranean Agro-Ecosystem

(2013) Fuensanta García-Orenes et al.   PLoS One

Strong functional stability of soil microbial communities under semiarid Mediterranean conditions and subjected to long-term shifts in baseline precipitation

(2013) J. Curiel Yuste et al.   SOIL BIOLOGY & BIOCHEMISTRY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Changes in soil bacterial community triggered by drought-induced gap succession preceded changes in soil C stocks and quality

(2012) Jorge Curiel Yuste et al.   Ecology and Evolution

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial communities associated with the root system of wild olives (Olea europaea L. subsp. europaea var. sylvestris) are good reservoirs of bacteria with antagonistic potential against Verticillium dahliae

(2011) Sergio Aranda et al.   PLANT AND SOIL

Effect of pesticides on soil microbial community

(2010) Chi-Chu Lo   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES

Phenolic Responses of Resistant and Susceptible Olive Cultivars Induced by Defoliating and NondefoliatingVerticillium dahliaePathotypes

(2010) Emmanouil A. Markakis et al.   PLANT DISEASE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of different olive-grove management systems on the organic carbon and nitrogen content of the soil in Jaén (Spain)

(2007) J. Castro et al.   SOIL & TILLAGE RESEARCH