Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of environmental variation and spatial distance on Bacteria, Archaea and viruses in sub-polar and arctic waters

(2013) Christian Winter et al.   ISME Journal

The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

(2013) Nils Johan Fredriksson et al.   PLoS One

Bacterial and Archaeal Diversity in Sediments of West Lake Bonney, McMurdo Dry Valleys, Antarctica

(2012) Chao Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of Essential Oils on Methane Production and Fermentation by, and Abundance and Diversity of, Rumen Microbial Populations

(2012) Amlan K. Patra et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities

(2012) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in Microbiota Population during Fermentation ofNarezushias Revealed by Pyrosequencing Analysis

(2012) Masashi KIYOHARA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

(2012) Michael Quail et al.   BMC GENOMICS

Culture-Dependent and -Independent Investigations of Microbial Diversity on Urinary Catheters

(2012) Y. Xu et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Bacterial and Archaeal Symbionts in the South China Sea Sponge Phakellia fusca: Community Structure, Relative Abundance, and Ammonia-Oxidizing Populations

(2012) Minqi Han et al.   MARINE BIOTECHNOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Spatial and Temporal Variation of Archaeal, Bacterial and Fungal Communities in Agricultural Soils

(2012) Michele C. Pereira e Silva et al.   PLoS One

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

(2012) Derrick E. Fouts et al.   PLoS One

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Archaea in Symbioses

(2012) Christoph Wrede et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene

(2011) Jeff S Bowman et al.   ISME Journal

Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier

(2011) Anita Zumsteg et al.   MICROBIAL ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Culture-Independent Characterization of Archaeal Biodiversity in Swine Confinement Building Bioaerosols

(2009) B. Nehme et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis

(2009) F.H. Liu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Quantitative effects of position and type of single mismatch on single base primer extension

(2009) Jer-Horng Wu et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Quantification of the Detrimental Effect of a Single Primer-Template Mismatch by Real-Time PCR Using the 16S rRNA Gene as an Example

(2008) D. Bru et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY