Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

Temporal and spatial variations of greenhouse gas fluxes from a tidal mangrove wetland in Southeast China

(2015) Haitao Wang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

Soil-Borne Microbiome: Linking Diversity to Function

(2015) Lucas W. Mendes et al.   MICROBIAL ECOLOGY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Interactions with soil biota shift from negative to positive when a tree species is moved outside its native range

(2014) Michael J. Gundale et al.   NEW PHYTOLOGIST

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

(2013) Stéphane Uroz et al.   PLoS One

Different Selective Effects on Rhizosphere Bacteria Exerted by Genetically Modified versus Conventional Potato Lines

(2013) Armando Cavalcante Franco Dias et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Differential response of archaeal groups to land use change in an acidic red soil

(2013) Ju-Pei Shen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Roots from beech (Fagus sylvatica L.) and ash (Fraxinus excelsior L.) differentially affect soil microorganisms and carbon dynamics

(2013) Simone Cesarz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase

(2013) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Aboveground Vegetation Influences Belowground Microeukaryotic Community in a Mangrove Nature Reserve

(2013) Zheng Yu et al.   WETLANDS

Archaeal abundance in relation to root and fungal exudation rates

(2012) Anna E. Karlsson et al.   FEMS MICROBIOLOGY ECOLOGY

PAH biotransformation and sorption by Fusarium solani and Arthrobacter oxydans isolated from a polluted soil in axenic cultures and mixed co-cultures

(2012) Cécile Thion et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere

(2011) Pankaj Trivedi et al.   ISME Journal

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

(2011) L. E. Lehtovirta-Morley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi

(2011) A. Rosling et al.   SCIENCE

Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands

(2011) C. Collignon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of Forest Trees on the Distribution of Mineral Weathering-Associated Bacterial Communities of the Scleroderma citrinum Mycorrhizosphere

(2010) C. Calvaruso et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Control of Nitrification by Tree Species in a Common-Garden Experiment

(2010) Kasaina Sitraka Andrianarisoa et al.   ECOSYSTEMS

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand

(2010) Marc Buée et al.   Fungal Ecology

Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest

(2010) Frank Rasche et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Host preferences and differential contributions of deciduous tree species shape mycorrhizal species richness in a mixed Central European forest

(2010) Christa Lang et al.   MYCORRHIZA

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The bacterial genusCollimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments

(2009) Johan H. J. Leveau et al.   ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO2

(2009) Barbara Drigo et al.   ISME Journal

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Tree Species Traits Influence Soil Physical, Chemical, and Biological Properties in High Elevation Forests

(2009) Edward Ayres et al.   PLoS One

Efficient mineral weathering is a distinctive functional trait of the bacterial genus Collimonas

(2009) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of Tree Species and Mycorrhizal Colonization on the Archaeal Population of Boreal Forest Rhizospheres

(2008) M. Bomberg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples

(2008) Aurélie Cébron et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH