Differential sensitivity of total and active soil microbial communities to drought and forest management

Does thinning-induced gap size result in altered soil microbial community in pine plantation in eastern Tibetan Plateau?

(2017) Bing Yang et al.   Ecology and Evolution

Forest understory plant and soil microbial response to an experimentally induced drought and heat-pulse event: the importance of maintaining the continuum

(2016) Isabell von Rein et al.   GLOBAL CHANGE BIOLOGY

Drought history affects grassland plant and microbial carbon turnover during and after a subsequent drought event

(2016) Lucia Fuchslueger et al.   JOURNAL OF ECOLOGY

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils

(2016) Felipe Bastida et al.   MOLECULAR ECOLOGY

Soil microbial community resistance to drought and links to C stabilization in an Australian grassland

(2016) Alberto Canarini et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass

(2016) Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study

(2015) Felipe Bastida et al.   APPLIED SOIL ECOLOGY

Fungal communities are more sensitive indicators to non-extreme soil moisture variations than bacterial communities

(2015) A. Kaisermann et al.   APPLIED SOIL ECOLOGY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Soil microbial community response and recovery following group selection harvest: Temporal patterns from an experimental harvest in a US northern hardwood forest

(2015) Tera E. Lewandowski et al.   FOREST ECOLOGY AND MANAGEMENT

Effects of Thinning and Induced Drought on Microbiological Soil Properties and Plant Species Diversity at Dry and Semiarid Locations

(2015) Javier Hedo de Santiago et al.   LAND DEGRADATION & DEVELOPMENT

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

Soil restoration with organic amendments: linking cellular functionality and ecosystem processes

(2015) F. Bastida et al.   Scientific Reports

Soil Bacterial Community Structure Responses to Precipitation Reduction and Forest Management in Forest Ecosystems across Germany

(2015) Katja Felsmann et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study

(2014) Thomas W. Crowther et al.   GLOBAL CHANGE BIOLOGY

Metaproteomics of soils from semiarid environment: Functional and phylogenetic information obtained with different protein extraction methods

(2014) F. Bastida et al.   Journal of Proteomics

Tackling soil diversity with the assembly of large, complex metagenomes

(2014) Adina Chuang Howe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discontinuity in the responses of ecosystem processes and multifunctionality to altered soil community composition

(2014) Mark A. Bradford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial regulation of global biogeochemical cycles

(2014) Johannes Rousk et al.   Frontiers in Microbiology

Investigating the long-term legacy of drought and warming on the soil microbial community across five European shrubland ecosystems

(2013) Johannes Rousk et al.   GLOBAL CHANGE BIOLOGY

Soil microbial and nutrient responses to 7 years of seasonally altered precipitation in a Chihuahuan Desert grassland

(2013) Colin W. Bell et al.   GLOBAL CHANGE BIOLOGY

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Experimental drought reduces the transfer of recently fixed plant carbon to soil microbes and alters the bacterial community composition in a mountain meadow

(2013) Lucia Fuchslueger et al.   NEW PHYTOLOGIST

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

A meta-analysis of soil microbial biomass responses to forest disturbances

(2013) Sandra R. Holden et al.   Frontiers in Microbiology

Controls on soil microbial community stability under climate change

(2013) Franciska T. de Vries et al.   Frontiers in Microbiology

Response of the Soil Microbial Community to Changes in Precipitation in a Semiarid Ecosystem

(2012) Melissa A. Cregger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Stoichiometric flexibility as a regulator of carbon and nutrient cycling in terrestrial ecosystems under change

(2012) Seeta A. Sistla et al.   NEW PHYTOLOGIST

Environmental and stoichiometric controls on microbial carbon-use efficiency in soils

(2012) Stefano Manzoni et al.   NEW PHYTOLOGIST

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

(2012) J. Pell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of the ecological restoration practices of prescribed burning and mechanical thinning on soil microbial enzyme activities and leaf litter decomposition

(2012) Anthony J. Rietl et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change

(2012) Petr Baldrian et al.   SOIL BIOLOGY & BIOCHEMISTRY

A trait-based framework for predicting when and where microbial adaptation to climate change will affect ecosystem functioning

(2011) Matthew D. Wallenstein et al.   BIOGEOCHEMISTRY

Effect of warming and drought on grassland microbial communities

(2011) Cody S Sheik et al.   ISME Journal

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal community responses to precipitation

(2010) CHRISTINE V. HAWKES et al.   GLOBAL CHANGE BIOLOGY

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Climate change impacts, adaptive capacity, and vulnerability of European forest ecosystems

(2009) Marcus Lindner et al.   FOREST ECOLOGY AND MANAGEMENT

Novel Root Fungal Consortium Associated with a Dominant Desert Grass

(2008) A. Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Warming and drying suppress microbial activity and carbon cycling in boreal forest soils

(2008) STEVEN D. ALLISON et al.   GLOBAL CHANGE BIOLOGY

Reappraisal of drying and wetting effects on C and N mineralization and fluxes in soils

(2008) WERNER BORKEN et al.   GLOBAL CHANGE BIOLOGY

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

Soil Microbial Responses to Temporal Variations of Moisture and Temperature in a Chihuahuan Desert Grassland

(2008) Colin Bell et al.   MICROBIAL ECOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA