Meta‐analysis of the coral environmental stress response: Acropora corals show opposing responses depending on stress intensity

Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress

(2019) Catalina Aguilar et al.   BMC GENOMICS

The past, present, and future of coral heat stress studies

(2019) Maha J. Cziesielski et al.   Ecology and Evolution

Resilience in reef‐building corals: The ecological and evolutionary importance of the host response to thermal stress

(2019) Crawford Drury   MOLECULAR ECOLOGY

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral

(2018) Marie E. Strader et al.   BMC GENOMICS

Presence–Absence Polymorphisms of Highly Expressed FP Sequences Contribute to Fluorescent Polymorphisms in Acropora digitifera

(2018) Shiho Takahashi-Kariyazono et al.   Genome Biology and Evolution

Deciphering the nature of the coral–Chromera association

(2018) Amin R Mohamed et al.   ISME Journal

De novo assembly and annotation of the Acropora gemmifera transcriptome

(2018) Matthew J. Oldach et al.   Marine Genomics

Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals

(2018) John Everett Parkinson et al.   MOLECULAR ECOLOGY

Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

(2018) Maha J. Cziesielski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Plasticity in gene expression and fatty acid profiles of Acropora tenuis reciprocally transplanted between two water quality regimes in the central Great Barrier Reef, Australia

(2018) Melissa M. Rocker et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Polygenic evolution drives species divergence and climate adaptation in corals

(2017) Noah H. Rose et al.   EVOLUTION

Suppression of NF-κB signal pathway by NLRC3-like protein in stony coral Acropora aculeus under heat stress

(2017) Zhi Zhou et al.   FISH & SHELLFISH IMMUNOLOGY

Functional genomic analysis of corals from natural CO2 -seeps reveals core molecular responses involved in acclimatization to ocean acidification

(2017) Carly D. Kenkel et al.   GLOBAL CHANGE BIOLOGY

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Canonical and cellular pathways timing gamete release in Acropora digitifera, Okinawa, Japan

(2017) Y. Rosenberg et al.   MOLECULAR ECOLOGY

A microRNA regulates the response of corals to thermal stress

(2017) Andrian P. Gajigan et al.   MOLECULAR ECOLOGY

Genomic models predict successful coral adaptation if future ocean warming rates are reduced

(2017) Rachael A. Bay et al.   Science Advances

Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis

(2017) Lupita J. Ruiz-Jones et al.   Science Advances

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

(2017) Rachel M. Wright et al.   Scientific Reports

The Mesoderm-Forming Gene brachyury Regulates Ectoderm-Endoderm Demarcation in the Coral Acropora digitifera

(2016) Yuuri Yasuoka et al.   CURRENT BIOLOGY

Developmental Progression in the CoralAcropora digitiferaIs Controlled by Differential Expression of Distinct Regulatory Gene Networks

(2016) Alejandro Reyes-Bermudez et al.   Genome Biology and Evolution

Acropora digitiferaEncodes the Largest Known Family of Fluorescent Proteins that Has Persisted during the Evolution ofAcroporaSpecies

(2016) Shiho Takahashi-Kariyazono et al.   Genome Biology and Evolution

Evolutionary Consequences of DNA Methylation in a Basal Metazoan

(2016) Groves B. Dixon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differences in environmental stress response among yeasts is consistent with species-specific lifestyles

(2016) Christian Brion et al.   MOLECULAR BIOLOGY OF THE CELL

The transcriptomic response of the coralAcropora digitiferato a competentSymbiodiniumstrain: the symbiosome as an arrested early phagosome

(2016) A. R. Mohamed et al.   MOLECULAR ECOLOGY

Red fluorescence in coral larvae is associated with a diapause-like state

(2016) Marie E. Strader et al.   MOLECULAR ECOLOGY

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

(2015) Rachel M Wright et al.   BMC GENOMICS

Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes

(2015) A. Moya et al.   MOLECULAR ECOLOGY

Transcriptomic differences between day and night inAcropora milleporaprovide new insights into metabolite exchange and light-enhanced calcification in corals

(2015) A. Bertucci et al.   MOLECULAR ECOLOGY

The role of transcriptome resilience in resistance of corals to bleaching

(2015) Francois O. Seneca et al.   MOLECULAR ECOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Signaling cascades and the importance of moonlight in coral broadcast mass spawning

(2015) Paulina Kaniewska et al.   eLife

Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change

(2015) Paulina Kaniewska et al.   PLoS One

Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress

(2014) Nedeljka Rosic et al.   BMC GENOMICS

Gene expression profiles during short-term heat stress in the red sea coralStylophora pistillata

(2014) Keren Maor-Landaw et al.   GLOBAL CHANGE BIOLOGY

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

RNA-seq Profiles of Immune Related Genes in the Staghorn Coral Acropora cervicornis Infected with White Band Disease

(2013) Silvia Libro et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rate of environmental change determines stress response specificity

(2013) J. W. Young et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Coral resilience to ocean acidification and global warming through pH up-regulation

(2012) Malcolm McCulloch et al.   Nature Climate Change

Transcriptomic responses to darkness stress point to common coral bleaching mechanisms

(2011) M. K. DeSalvo et al.   CORAL REEFS

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure

(2011) E. MEYER et al.   MOLECULAR ECOLOGY

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS