Differences in environmental stress response among yeasts is consistent with species-specific lifestyles

Intersecting transcription networks constrain gene regulatory evolution

(2015) Trevor R. Sorrells et al.   NATURE

Evolution of intraspecific transcriptomic landscapes in yeasts

(2015) Christian Brion et al.   NUCLEIC ACIDS RESEARCH

Genetic Mapping of MAPK-Mediated Complex Traits Across S. cerevisiae

(2015) Sebastian Treusch et al.   PLoS Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

A system based network approach to ethanol tolerance in Saccharomyces cerevisiae

(2014) Ceyda Kasavi et al.   BMC Systems Biology

Analysis of the yeast short-term Crabtree effect and its origin

(2014) Arne Hagman et al.   FEBS Journal

Population Genomics Reveals Chromosome-Scale Heterogeneous Evolution in a Protoploid Yeast

(2014) Anne Friedrich et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Simple FCM Method to Avoid Misinterpretation in Saccharomyces cerevisiae Cell Cycle Assessment between G0 and Sub-G1

(2014) Pierre Delobel et al.   PLoS One

Protein kinase A regulates gene-specific translational adaptation in differentiating yeast

(2014) P. P. Vaidyanathan et al.   RNA

Ancestral resurrection reveals evolutionary mechanisms of kinase plasticity

(2014) Conor J Howard et al.   eLife

Comparative gene expression between two yeast species

(2013) Yuanfang Guan et al.   BMC GENOMICS

Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks

(2013) Christian Brion et al.   BMC GENOMICS

Global Expression Analysis of the Yeast Lachancea (Saccharomyces) kluyveri Reveals New URC Genes Involved in Pyrimidine Catabolism

(2013) Anna Andersson Rasmussen et al.   EUKARYOTIC CELL

A New System for Comparative Functional Genomics of Saccharomyces Yeasts

(2013) A. A. Caudy et al.   GENETICS

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

(2013) D. A. Skelly et al.   GENOME RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Yeast “Make-Accumulate-Consume” Life Strategy Evolved as a Multi-Step Process That Predates the Whole Genome Duplication

(2013) Arne Hagman et al.   PLoS One

Mitochondrial Genome Evolution in a Single Protoploid Yeast Species

(2013) Paul P. Jung et al.   G3-Genes Genomes Genetics

The Regulation of Filamentous Growth in Yeast

(2012) Paul J. Cullen et al.   GENETICS

A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes

(2012) Nikolai Slavov et al.   MOLECULAR BIOLOGY OF THE CELL

From sequence to function: Insights from natural variation in budding yeasts

(2011) Conrad A. Nieduszynski et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

The Response to Heat Shock and Oxidative Stress in Saccharomyces cerevisiae

(2011) K. A. Morano et al.   GENETICS

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

(2011) Devin R. Scannell et al.   G3-Genes Genomes Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Transient Genotype-by-Environment Interactions Following Environmental Shock Provide a Source of Expression Variation for Essential Genes

(2009) K. H. Eng et al.   GENETICS

Comparative genomics of protoploid Saccharomycetaceae

(2009) et al.   GENOME RESEARCH

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

(2009) David C. Hess et al.   PLoS Genetics

PredGPI: a GPI-anchor predictor

(2008) Andrea Pierleoni et al.   BMC BIOINFORMATICS

Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

(2007) Matthew J. Brauer et al.   MOLECULAR BIOLOGY OF THE CELL