Functional genomic analysis of corals from natural CO2 -seeps reveals core molecular responses involved in acclimatization to ocean acidification

Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic

(2017) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

Evaluation of TagSeq, a reliable low-cost alternative for RNAseq

(2016) Brian K. Lohman et al.   Molecular Ecology Resources

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Physiological and ecological performance differs in four coral taxa at a volcanic carbon dioxide seep

(2015) J. Strahl et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Biochemical responses to ocean acidification contrast between tropical corals with high and low abundances at volcanic carbon dioxide seeps

(2015) J. Strahl et al.   ICES JOURNAL OF MARINE SCIENCE

Ocean acidification affects productivity but not the severity of thermal bleaching in some tropical corals

(2015) Sam H. C. Noonan et al.   ICES JOURNAL OF MARINE SCIENCE

Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?: Table 1.

(2015) Melissa B. DeBiasse et al.   JOURNAL OF HEREDITY

Expression of calcification and metabolism-related genes in response to elevated pCO2 and temperature in the reef-building coral Acropora millepora

(2015) Melissa M. Rocker et al.   Marine Genomics

Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes

(2015) A. Moya et al.   MOLECULAR ECOLOGY

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Threatened Caribbean Coral Is Able to Mitigate the Adverse Effects of Ocean Acidification on Calcification by Increasing Feeding Rate

(2015) Erica K. Towle et al.   PLoS One

Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change

(2015) Paulina Kaniewska et al.   PLoS One

Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges

(2014) Kathleen M Morrow et al.   ISME Journal

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

(2014) Anderson B. Mayfield et al.   MOLECULAR ECOLOGY

The reef-building coral Siderastrea siderea exhibits parabolic responses to ocean acidification and warming

(2014) K. D. Castillo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides ) from different reef environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

(2013) Jeremie Vidal-Dupiol et al.   PLoS One

Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide

(2013) Sam H. C. Noonan et al.   PLoS One

Coral Energy Reserves and Calcification in a High-CO2 World at Two Temperatures

(2013) Verena Schoepf et al.   PLoS One

Impact of seawater acidification on pH at the tissue-skeleton interface and calcification in reef corals

(2013) A. A. Venn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological effects of ocean acidification and habitat complexity on reef-associated macroinvertebrate communities

(2013) K. E. Fabricius et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of ocean acidification on the dissolution rates of reef-coral skeletons

(2013) Robert van Woesik et al.   PeerJ

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D

(2012) Jason T Ladner et al.   BMC EVOLUTIONARY BIOLOGY

Productivity gains do not compensate for reduced calcification under near-future ocean acidification in the photosynthetic benthic foraminifer speciesMarginopora vertebralis

(2012) Sven Uthicke et al.   GLOBAL CHANGE BIOLOGY

Sensitivity of coral calcification to ocean acidification: a meta-analysis

(2012) Neil C. S. Chan et al.   GLOBAL CHANGE BIOLOGY

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral

(2012) Paulina Kaniewska et al.   PLoS One

Coral resilience to ocean acidification and global warming through pH up-regulation

(2012) Malcolm McCulloch et al.   Nature Climate Change

Ocean Acidification and Control of Reef Coral Calcification by Boundary Layer Limitation of Proton Flux

(2011) Paul Louis Jokiel   BULLETIN OF MARINE SCIENCE

Do fluctuating temperature environments elevate coral thermal tolerance?

(2011) T. A. Oliver et al.   CORAL REEFS

Ocean Acidification: Present Conditions and Future Changes in a High-CO2 World

(2011) Richard Feely et al.   OCEANOGRAPHY

Rapid Evolution of Coral Proteins Responsible for Interaction with the Environment

(2011) Christian R. Voolstra et al.   PLoS One

Development of Gene Expression Markers of Acute Heat-Light Stress in Reef-Building Corals of the Genus Porites

(2011) Carly D. Kenkel et al.   PLoS One

Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations

(2011) Katharina E. Fabricius et al.   Nature Climate Change

Mutualisms in a changing world: an evolutionary perspective

(2010) E. Toby Kiers et al.   ECOLOGY LETTERS

Physiological and isotopic responses of scleractinian corals to ocean acidification

(2010) Shani Krief et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Energetics approach to predicting mortality risk from environmental stress: a case study of coral bleaching

(2009) Kenneth R. N. Anthony et al.   FUNCTIONAL ECOLOGY

Development of clade-specific Symbiodinium primers for quantitative PCR (qPCR) and their application to detecting clade D symbionts in Caribbean corals

(2009) Adrienne M. S. Correa et al.   MARINE BIOLOGY

Variation in antioxidant gene expression in the scleractinian coral Acropora millepora under laboratory thermal stress

(2009) NBM Császár et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic variation in a coral reveals pathways of clonal organisation

(2009) Line K. Bay et al.   Marine Genomics

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

A Novel Function for Hydroxyproline Oxidase in Apoptosis through Generation of Reactive Oxygen Species

(2008) Sandra K. Cooper et al.   JOURNAL OF BIOLOGICAL CHEMISTRY