Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states

Comparative evaluation of genomic inbreeding parameters in seven commercial and autochthonous pig breeds

(2020) G. Schiavo et al.   Animal

Whole-Genome Resequencing Identifies KIT New Alleles That Affect Coat Color Phenotypes in Pigs

(2019) Zhongping Wu et al.   Frontiers in Genetics

Signatures of de-domestication in autochthonous pig breeds and of domestication in wild boar populations from MC1R and NR6A1 allele distribution

(2019) A. Ribani et al.   ANIMAL GENETICS

A genome-wide single nucleotide polymorphism and copy number variation analysis for number of piglets born alive

(2019) Nedenia Bonvino Stafuzza et al.   BMC GENOMICS

Detection and analysis of genome‐wide copy number variation in the pig genome using an 80 K SNP Beadchip

(2019) Yuan Wang et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

A Survey of Copy Number Variation in the Porcine Genome Detected From Whole-Genome Sequence

(2019) Brittney N. Keel et al.   Frontiers in Genetics

A machine learning approach for the identification of population-informative markers from high-throughput genotyping data: application to several pig breeds

(2019) G. Schiavo et al.   Animal

Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip

(2019) M. Muñoz et al.   Scientific Reports

Genome-wide association analyses for several exterior traits in the autochthonous Casertana pig breed

(2019) Giuseppina Schiavo et al.   Livestock Science

A genome scan for selection signatures in Taihu pig breeds using next-generation sequencing

(2018) Z. Wang et al.   Animal

Taking advantage from phenotype variability in a local animal genetic resource: identification of genomic regions associated with the hairless phenotype in Casertana pigs

(2018) G. Schiavo et al.   ANIMAL GENETICS

Diversity of copy number variation in a worldwide population of sheep

(2018) Liu Yang et al.   GENOMICS

Long reads: their purpose and place

(2018) Martin O Pollard et al.   HUMAN MOLECULAR GENETICS

Expression analysis of candidate genes for fatty acid composition in adipose tissue and identification of regulatory regions

(2018) Manuel Revilla et al.   Scientific Reports

Diversity of copy number variation in the worldwide goat population

(2018) Mei Liu et al.   HEREDITY

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

(2018) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

Diversity across major and candidate genes in European local pig breeds

(2018) María Muñoz et al.   PLoS One

Identification of Candidate Genes and Regulatory Factors Underlying Intramuscular Fat Content Through Longissimus Dorsi Transcriptome Analyses in Heavy Iberian Pigs

(2018) María Muñoz et al.   Frontiers in Genetics

A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits

(2017) Manuel Revilla et al.   PLoS One

Adipose tissue transcriptional response of lipid metabolism genes in growing Iberian pigs fed oleic acid v. carbohydrate enriched diets

(2016) R. Benítez et al.   Animal

A genome-wide association study of copy number variations with umbilical hernia in swine

(2016) Yi Long et al.   ANIMAL GENETICS

Authentication of “mono-breed” pork products: Identification of a coat colour gene marker in Cinta Senese pigs useful to this purpose

(2016) L. Fontanesi et al.   Livestock Science

Identification of Copy Number Variations in Xiang and Kele Pigs

(2016) Jian Xie et al.   PLoS One

Copy number variation detection using SNP genotyping arrays in three Chinese pig breeds

(2015) K. Dong et al.   ANIMAL GENETICS

Copy number variations in high and low fertility breeding boars

(2015) Tamas Revay et al.   BMC GENOMICS

Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors

(2015) Yogesh Paudel et al.   BMC GENOMICS

Assessing effective population size, coancestry and inbreeding effects on litter size using the pedigree and SNP data in closed lines of the Iberian pig breed

(2015) L. Silió et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genome Wide Distributions and Functional Characterization of Copy Number Variations between Chinese and Western Pigs

(2015) Hongyang Wang et al.   PLoS One

Genome-Wide Copy Number Variations Using SNP Genotyping in a Mixed Breed Swine Population

(2015) Ralph T. Wiedmann et al.   PLoS One

Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine

(2015) Ligang Wang et al.   Scientific Reports

Improved Detection and Characterization of Copy Number Variations Among Diverse Pig Breeds by Array CGH

(2015) J. Wang et al.   G3-Genes Genomes Genetics

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

(2015) Yu Hasegawa et al.   PLoS Genetics

Porcine methionine sulfoxide reductase B3: molecular cloning, tissue-specific expression profiles, and polymorphisms associated with ear size in Sus scrofa

(2015) Yuebo Zhang et al.   Journal of Animal Science and Biotechnology

Whole-genome CNV analysis: advances in computational approaches

(2015) Mehdi Pirooznia et al.   Frontiers in Genetics

Copy number variants in a highly inbred Iberian porcine strain

(2014) A. I. Fernández et al.   ANIMAL GENETICS

Copy number variants in Italian Large White pigs detected using high-density single nucleotide polymorphisms and their association with back fat thickness

(2014) G. Schiavo et al.   ANIMAL GENETICS

Global copy number analyses by next generation sequencing provide insight into pig genome variation

(2014) Jicai Jiang et al.   BMC GENOMICS

Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary

(2014) János Molnár et al.   BMC GENOMICS

Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing

(2014) Guoqiang Yi et al.   BMC GENOMICS

Enhancing Genome-Wide Copy Number Variation Identification by High Density Array CGH Using Diverse Resources of Pig Breeds

(2014) Jiying Wang et al.   PLoS One

The challenges and importance of structural variation detection in livestock

(2014) Derek M. Bickhart et al.   Frontiers in Genetics

Genome wide analysis reveals single nucleotide polymorphisms associated with fatness and putative novel copy number variants in three pig breeds

(2013) Katie E Fowler et al.   BMC GENOMICS

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

(2013) Yogesh Paudel et al.   BMC GENOMICS

Polymorphism in the ELOVL6 Gene Is Associated with a Major QTL Effect on Fatty Acid Composition in Pigs

(2013) Jordi Corominas et al.   PLoS One

Signatures of Diversifying Selection in European Pig Breeds

(2013) Samantha Wilkinson et al.   PLoS Genetics

Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

Identification of genome-wide copy number variations among diverse pig breeds by array CGH

(2012) Yan Li et al.   BMC GENOMICS

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

(2012) Jiying Wang et al.   BMC GENOMICS

A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits

(2012) Congying Chen et al.   BMC GENOMICS

Mechanisms for recurrent and complex human genomic rearrangements

(2012) Pengfei Liu et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Exploring copy number variation in the rabbit (Oryctolagus cuniculus) genome by array comparative genome hybridization

(2012) L. Fontanesi et al.   GENOMICS

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

(2012) Günter Klambauer et al.   NUCLEIC ACIDS RESEARCH

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative trait loci for fatness at growing and reproductive stages in Iberian × Meishan F2 sows

(2011) A. Tomás et al.   ANIMAL GENETICS

Maternal investment, sibling competition, and offspring survival with increasing litter size and parity in pigs (Sus scrofa)

(2011) Inger Lise Andersen et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Genetic contributions to behavioural diversity at the gene–environment interface

(2011) Andres Bendesky et al.   NATURE REVIEWS GENETICS

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

A Missense Mutation in PPARD Causes a Major QTL Effect on Ear Size in Pigs

(2011) Jun Ren et al.   PLoS Genetics

Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns

(2010) L. Fontanesi et al.   ANIMAL GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Copy number variation in the bovine genome

(2010) João Fadista et al.   BMC GENOMICS

An initial comparative map of copy number variations in the goat (Capra hircus) genome

(2010) Luca Fontanesi et al.   BMC GENOMICS

A first comparative map of copy number variations in the sheep genome

(2010) L. Fontanesi et al.   GENOMICS

A genome scan for quantitative trait loci affecting three ear traits in a White Duroc × Chinese Erhualian resource population

(2009) J. Ma et al.   ANIMAL GENETICS

Copy Number Variation in Human Health, Disease, and Evolution

(2009) Feng Zhang et al.   Annual Review of Genomics and Human Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A Snapshot of CNVs in the Pig Genome

(2008) João Fadista et al.   PLoS One