Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing

Copy number variation in Fayoumi and Leghorn chickens analyzed using array comparative genomic hybridization

(2014) J. Abernathy et al.   ANIMAL GENETICS

Global patterns of apparent copy number variation in birds revealed by cross-species comparative genomic hybridization

(2014) Benjamin M. Skinner et al.   CHROMOSOME RESEARCH

Large scale variation in DNA copy number in chicken breeds

(2013) Richard PMA Crooijmans et al.   BMC GENOMICS

Copy number variants in locally raised Chinese chicken genomes determined using array comparative genomic hybridization

(2013) Ming Tian et al.   BMC GENOMICS

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

(2013) Li Jiang et al.   BMC GENOMICS

Genome-Wide Patterns of Genetic Variation in Two Domestic Chickens

(2013) Wen-Lang Fan et al.   Genome Biology and Evolution

Genome-Wide Copy Number Variant Analysis in Inbred Chickens Lines With Different Susceptibility to Marek’s Disease

(2013) Juan Luo et al.   G3-Genes Genomes Genetics

Copy number variation in the genomes of domestic animals

(2012) A. Clop et al.   ANIMAL GENETICS

A genome-wide survey of copy number variation regions in various chicken breeds by array comparative genomic hybridization method

(2012) Y. Wang et al.   ANIMAL GENETICS

Copy number variations identified in the chicken using a 60K SNP BeadChip

(2012) X. Jia et al.   ANIMAL GENETICS

Statistical challenges associated with detecting copy number variations with next-generation sequencing

(2012) Shu Mei Teo et al.   BIOINFORMATICS

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

(2012) Jiying Wang et al.   BMC GENOMICS

Copy number variation in the cattle genome

(2012) George E. Liu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation

(2012) Jin P. Szatkiewicz et al.   NUCLEIC ACIDS RESEARCH

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Population-Genetic Properties of Differentiated Human Copy-Number Polymorphisms

(2011) Catarina D. Campbell et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The eggshell: structure, composition and mineralization

(2011) Maxwell et al.   Frontiers in Bioscience-Landmark

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

Sequence-based characterization of structural variation in the mouse genome

(2011) Binnaz Yalcin et al.   NATURE

Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

(2011) Dalila Pinto et al.   NATURE BIOTECHNOLOGY

A Complex Genomic Rearrangement Involving the Endothelin 3 Locus Causes Dermal Hyperpigmentation in the Chicken

(2011) Ben Dorshorst et al.   PLoS Genetics

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection

(2011) Omer Gokcumen et al.   GENOME BIOLOGY

Genomic organization and molecular phylogenies of the beta (β) keratin multigene family in the chicken (Gallus gallus) and zebra finch (Taeniopygia guttata): implications for feather evolution

(2010) Matthew J Greenwold et al.   BMC EVOLUTIONARY BIOLOGY

An initial map of chromosomal segmental copy number variations in the chicken

(2010) Xiaofei Wang et al.   BMC GENOMICS

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

Diversity of Human Copy Number Variation and Multicopy Genes

(2010) Peter H. Sudmant et al.   SCIENCE

Copy Number Variation in Human Health, Disease, and Evolution

(2009) Feng Zhang et al.   Annual Review of Genomics and Human Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Sensitive and accurate detection of copy number variants using read depth of coverage

(2009) S. Yoon et al.   GENOME RESEARCH

Copy number variants, diseases and gene expression

(2009) C. N. Henrichsen et al.   HUMAN MOLECULAR GENETICS

Finding the missing heritability of complex diseases

(2009) Teri A. Manolio et al.   NATURE

Origins and functional impact of copy number variation in the human genome

(2009) Donald F. Conrad et al.   NATURE

Personalized copy number and segmental duplication maps using next-generation sequencing

(2009) Can Alkan et al.   NATURE GENETICS

Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances

(2009) T. LaFramboise   NUCLEIC ACIDS RESEARCH

Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens

(2009) Dominic Wright et al.   PLoS Genetics

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

(2009) P. J. Hastings et al.   PLoS Genetics

Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution

(2008) Darren K Griffin et al.   BMC GENOMICS

Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken

(2008) Martin G Elferink et al.   BMC GENOMICS

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

(2008) B. J. Norris et al.   GENOME RESEARCH

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse

(2008) Gerli Rosengren Pielberg et al.   NATURE GENETICS