Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine

Global copy number analyses by next generation sequencing provide insight into pig genome variation

(2014) Jicai Jiang et al.   BMC GENOMICS

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins

(2014) Lingyang Xu et al.   BMC GENOMICS

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

(2014) Lingyang Xu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

NOD1 expression is increased in the adipose tissue of women with gestational diabetes

(2014) Martha Lappas   JOURNAL OF ENDOCRINOLOGY

Netrin-1 promotes adipose tissue macrophage retention and insulin resistance in obesity

(2014) Bhama Ramkhelawon et al.   NATURE MEDICINE

SNPs detection in DHPS-WDR83 overlapping genes mapping on porcine chromosome 2 in a QTL region for meat pH

(2013) Paolo Zambonelli et al.   BMC GENETICS

Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication

(2013) Yogesh Paudel et al.   BMC GENOMICS

Genome-wide association of meat quality traits and tenderness in swine1,2

(2013) D. J. Nonneman et al.   JOURNAL OF ANIMAL SCIENCE

A genetical genomics approach reveals new candidates and confirms known candidate genes for drip loss in a porcine resource population

(2013) Hanna Heidt et al.   MAMMALIAN GENOME

Genome-Wide Association Study of Meat Quality Traits in a White Duroc×Erhualian F2 Intercross and Chinese Sutai Pigs

(2013) Junwu Ma et al.   PLoS One

Identification of Genome-Wide Copy Number Variations among Diverse Pig Breeds Using SNP Genotyping Arrays

(2013) Jiying Wang et al.   PLoS One

Genome-Wide Copy Number Variations Inferred from SNP Genotyping Arrays Using a Large White and Minzhu Intercross Population

(2013) Ligang Wang et al.   PLoS One

Molecular advances in QTL discovery and application in pig breeding

(2013) Catherine W. Ernst et al.   TRENDS IN GENETICS

Genome-Wide Copy Number Variant Analysis in Inbred Chickens Lines With Different Susceptibility to Marek’s Disease

(2013) Juan Luo et al.   G3-Genes Genomes Genetics

A Copy Number Variant at the KITLG Locus Likely Confers Risk for Canine Squamous Cell Carcinoma of the Digit

(2013) Danielle M. Karyadi et al.   PLoS Genetics

Connecting vesicular transport with lipid synthesis: FAPP2

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Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

A genome-wide detection of copy number variations using SNP genotyping arrays in swine

(2012) Jiying Wang et al.   BMC GENOMICS

A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits

(2012) Congying Chen et al.   BMC GENOMICS

Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake

(2012) Yali Hou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-Wide Association Analysis of Meat Quality Traits in a Porcine Large White × Minzhu Intercross Population

(2012) Weizhen Luo et al.   International Journal of Biological Sciences

Genome-wide association study for intramuscular fatty acid composition in an Iberian × Landrace cross1

(2012) Y. Ramayo-Caldas et al.   JOURNAL OF ANIMAL SCIENCE

Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era

(2012) Zhi-Liang Hu et al.   NUCLEIC ACIDS RESEARCH

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

Identification of Carcass and Meat Quality QTL in an F2 Duroc × Pietrain Pig Resource Population Using Different Least-Squares Analysis Models

(2011) Igseo Choi et al.   Frontiers in Genetics

Quantitative trait loci for meat quality traits in pigs considering imprinting and epistatic effects

(2010) Carol-Anne Duthie et al.   MEAT SCIENCE

The Sequence Alignment/Map format and SAMtools

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Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Finding the missing heritability of complex diseases

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms

(2008) Xiaoyi Gao et al.   GENETIC EPIDEMIOLOGY

Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis

(2008) Iuliana Ionita-Laza et al.   GENOMICS

A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis1

(2008) J. Estellé et al.   JOURNAL OF ANIMAL SCIENCE

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

(2008) Joshua M Korn et al.   NATURE GENETICS

Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia

(2008) T. Walsh et al.   SCIENCE

Quantitative trait locus mapping in an F2 Duroc × Pietrain resource population: II. Carcass and meat quality traits1

(2007) D. B. Edwards et al.   JOURNAL OF ANIMAL SCIENCE