A machine learning approach for the identification of population-informative markers from high-throughput genotyping data: application to several pig breeds

Genome-wide association studies for 30 haematological and blood clinical-biochemical traits in Large White pigs reveal genomic regions affecting intermediate phenotypes

(2019) Samuele Bovo et al.   Scientific Reports

Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classification approach

(2018) A. Jacobs et al.   Scientific Reports

Detection of Selection Signatures in Chinese Landrace and Yorkshire Pigs Based on Genotyping-by-Sequencing Data

(2018) Kai Wang et al.   Frontiers in Genetics

Genomic analysis reveals genes affecting distinct phenotypes among different Chinese and western pig breeds

(2018) Zhe Zhang et al.   Scientific Reports

Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond

(2017) Jisca Huisman   Molecular Ecology Resources

Random forest estimation of genomic breeding values for disease susceptibility over different disease incidences and genomic architectures in simulated cow calibration groups

(2016) S. Naderi et al.   JOURNAL OF DAIRY SCIENCE

Authentication of “mono-breed” pork products: Identification of a coat colour gene marker in Cinta Senese pigs useful to this purpose

(2016) L. Fontanesi et al.   Livestock Science

Principal component analysis: a review and recent developments

(2016) Ian T. Jolliffe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Twenty years of artificial directional selection have shaped the genome of the Italian Large White pig breed

(2015) G. Schiavo et al.   ANIMAL GENETICS

PLAG1 and NCAPG-LCORL in livestock

(2015) Akiko Takasuga   ANIMAL SCIENCE JOURNAL

Combined use of principal component analysis and random forests identify population-informative single nucleotide polymorphisms: application in cattle breeds

(2015) F. Bertolini et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds

(2014) Songbai Yang et al.   BMC GENETICS

Genomewide association for a dominant pigmentation gene in sheep

(2013) J.W. Kijas et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle1

(2013) B. Hulsegge et al.   JOURNAL OF ANIMAL SCIENCE

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

(2013) Mingzhou Li et al.   NATURE GENETICS

Genetic Diversity, Linkage Disequilibrium and Selection Signatures in Chinese and Western Pigs Revealed by Genome-Wide SNP Markers

(2013) Huashui Ai et al.   PLoS One

Signatures of Diversifying Selection in European Pig Breeds

(2013) Samantha Wilkinson et al.   PLoS Genetics

Development of a genetic tool for product regulation in the diverse British pig breed market

(2012) Samantha Wilkinson et al.   BMC GENOMICS

Evaluation of approaches for identifying population informative markers from high density SNP Chips

(2011) Samantha Wilkinson et al.   BMC GENETICS

Performance of random forest when SNPs are in linkage disequilibrium

(2009) Yan A Meng et al.   BMC BIOINFORMATICS