Myriocin-induced adaptive laboratory evolution of an industrial strain of Saccharomyces cerevisiae reveals its potential to remodel lipid composition and heat tolerance

Heat Shock Factor 2 Protects against Proteotoxicity by Maintaining Cell-Cell Adhesion

(2020) Jenny Joutsen et al.   Cell Reports

Regulation of Serum Sphingolipids in Andean Children Born and Living at High Altitude (3775 m)

(2019) Pietro Barbacini et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Context is everything: aneuploidy in cancer

(2019) Uri Ben-David et al.   NATURE REVIEWS GENETICS

nQuire: a statistical framework for ploidy estimation using next generation sequencing

(2018) Clemens L. Weiß et al.   BMC BIOINFORMATICS

Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae

(2018) Tomas Strucko et al.   METABOLIC ENGINEERING

Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication

(2018) Jean-Luc Legras et al.   MOLECULAR BIOLOGY AND EVOLUTION

The origin and adaptive evolution of domesticated populations of yeast from Far East Asia

(2018) Shou-Fu Duan et al.   Nature Communications

Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution

(2018) Bram Van den Bergh et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source

(2017) Amber L. Scott et al.   MOLECULAR BIOLOGY AND EVOLUTION

Serine-Dependent Sphingolipid Synthesis Is a Metabolic Liability of Aneuploid Cells

(2017) Sunyoung Hwang et al.   Cell Reports

Sng1 associates with Nce102 to regulate the yeast Pkh–Ypk signalling module in response to sphingolipid status

(2016) Sara García-Marqués et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Making Sense of the Yeast Sphingolipid Pathway

(2016) Márton Megyeri et al.   JOURNAL OF MOLECULAR BIOLOGY

Tempo and mode of genome evolution in a 50,000-generation experiment

(2016) Olivier Tenaillon et al.   NATURE

Control of Plasma Membrane Permeability by ABC Transporters

(2015) Svetlana Khakhina et al.   EUKARYOTIC CELL

Polyploidy can drive rapid adaptation in yeast

(2015) Anna M. Selmecki et al.   NATURE

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways

(2015) Karin Voordeckers et al.   PLoS Genetics

Regulation of Gene Expression through a Transcriptional Repressor that Senses Acyl-Chain Length in Membrane Phospholipids

(2014) Harald F. Hofbauer et al.   DEVELOPMENTAL CELL

Yeast lipid metabolism at a glance

(2014) Lisa Klug et al.   FEMS YEAST RESEARCH

Rom2-dependent Phosphorylation of Elo2 Controls the Abundance of Very Long-chain Fatty Acids

(2014) Daniel K. Olson et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity

(2014) Kaan Yilancioglu et al.   Journal of Chemical Information and Modeling

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

Iron, glucose and intrinsic factors alter sphingolipid composition as yeast cells enter stationary phase

(2013) Robert L. Lester et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Sphingolipids and lifespan regulation

(2013) Xinhe Huang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

The Chemical Basis of Serine Palmitoyltransferase Inhibition by Myriocin

(2013) John M. Wadsworth et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Adaptive laboratory evolution – principles and applications for biotechnology

(2013) Martin Dragosits et al.   Microbial Cell Factories

Genome dynamics during experimental evolution

(2013) Jeffrey E. Barrick et al.   NATURE REVIEWS GENETICS

Genetic and Phenotypic Characteristics of Baker's Yeast: Relevance to Baking

(2013) Francisca Randez-Gil et al.   Annual Review of Food Science and Technology

Qualimap: evaluating next-generation sequencing alignment data

(2012) Fernando García-Alcalde et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Aneuploidy causes proteotoxic stress in yeast

(2012) A. B. Oromendia et al.   GENES & DEVELOPMENT

Metabolism and Regulation of Glycerolipids in the Yeast Saccharomyces cerevisiae

(2012) Susan A. Henry et al.   GENETICS

Orm protein phosphoregulation mediates transient sphingolipid biosynthesis response to heat stress via the Pkh-Ypk and Cdc55-PP2A pathways

(2012) Yidi Sun et al.   MOLECULAR BIOLOGY OF THE CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Flexibility of a Eukaryotic Lipidome – Insights from Yeast Lipidomics

(2012) Christian Klose et al.   PLoS One

Karyotypic Determinants of Chromosome Instability in Aneuploid Budding Yeast

(2012) Jin Zhu et al.   PLoS Genetics

Hydroxylation state of fatty acid and long-chain base moieties of sphingolipid determine the sensitivity to growth inhibition due to AUR1 repression in Saccharomyces cerevisiae

(2011) Motohiro Tani et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Pumping lipids with P4-ATPases

(2011) Rosa L. López-Marqués et al.   BIOLOGICAL CHEMISTRY

Bread, beer and wine: Yeast domestication in the Saccharomyces sensu stricto complex

(2011) Delphine Sicard et al.   COMPTES RENDUS BIOLOGIES

Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties

(2011) Z. Petek Çakar et al.   FEMS YEAST RESEARCH

Aneuploidy Drives Genomic Instability in Yeast

(2011) J. M. Sheltzer et al.   SCIENCE

Hunger Artists: Yeast Adapted to Carbon Limitation Show Trade-Offs under Carbon Sufficiency

(2011) Jared W. Wenger et al.   PLoS Genetics

A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language

(2011) Ronny Herzog et al.   GENOME BIOLOGY

Soraphen A, an inhibitor of acetyl CoA carboxylase activity, interferes with fatty acid elongation

(2010) Donald B. Jump et al.   BIOCHEMICAL PHARMACOLOGY

Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

(2010) Norman Pavelka et al.   NATURE

High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?

(2009) Babiker M. A. Abdel-Banat et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Linking phospholipid flippases to vesicle-mediated protein transport

(2009) Baby-Periyanayaki Muthusamy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

PSI1 is responsible for the stearic acid enrichment that is characteristic of phosphatidylinositol in yeast

(2009) Marina Le Guédard et al.   FEBS Journal

Adaptive evolution of baker's yeast in a dough-like environment enhances freeze and salinity tolerance

(2009) Jaime Aguilera et al.   Microbial Biotechnology

Ploidy reduction in Saccharomyces cerevisiae

(2007) A. C Gerstein et al.   Biology Letters