nQuire: a statistical framework for ploidy estimation using next generation sequencing

Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis

(2017) Zachariah Gompert et al.   Molecular Ecology Resources

Changing Ploidy as a Strategy: The Irish Potato Famine Pathogen Shifts Ploidy in Relation to Its Sexuality

(2017) Ying Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast

(2016) Sandeep Venkataram et al.   CELL

Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation

(2016) Yuan O. Zhu et al.   G3-Genes Genomes Genetics

Polyploidy can drive rapid adaptation in yeast

(2015) Anna M. Selmecki et al.   NATURE

ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data

(2015) Gabriel R. A. Margarido et al.   PLoS Computational Biology

Efficient analysis of ploidy levels in plant evolutionary ecology

(2013) Serdar Dirihan et al.   CARYOLOGIA

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine

(2013) Kentaro Yoshida et al.   eLife

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

(2012) David E. L. Cooke et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS