Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers

The genomic history of the Iberian Peninsula over the past 8000 years

(2019) Iñigo Olalde et al.   SCIENCE

Survival of Late Pleistocene Hunter-Gatherer Ancestry in the Iberian Peninsula

(2019) Vanessa Villalba-Mouco et al.   CURRENT BIOLOGY

Ancient genomes indicate population replacement in Early Neolithic Britain

(2019) Selina Brace et al.   Nature Ecology & Evolution

The formation of human populations in South and Central Asia

(2019) Vagheesh M. Narasimhan et al.   SCIENCE

Estimating genetic kin relationships in prehistoric populations

(2018) Jose Manuel Monroy Kuhn et al.   PLoS One

Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

(2018) Cristina Valdiosera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cocina cave revisited: Bayesian radiocarbon chronology for the last hunter-gatherers and first farmers in Eastern Iberia

(2018) Oreto García-Puchol et al.   QUATERNARY INTERNATIONAL

Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations

(2018) Marieke van de Loosdrecht et al.   SCIENCE

Ancient genomes from Iceland reveal the making of a human population

(2018) S. Sunna Ebenesersdóttir et al.   SCIENCE

The genetic prehistory of the Baltic Sea region

(2018) Alissa Mittnik et al.   Nature Communications

Early Neolithic executions indicated by clustered cranial trauma in the mass grave of Halberstadt

(2018) Christian Meyer et al.   Nature Communications

The genomic history of southeastern Europe

(2018) Iain Mathieson et al.   NATURE

The Beaker phenomenon and the genomic transformation of northwest Europe

(2018) Iñigo Olalde et al.   NATURE

A genomic Neolithic time transect of hunter-farmer admixture in central Poland

(2018) D. M. Fernandes et al.   Scientific Reports

The Neolithic transition in the western Mediterranean: a complex and non-linear diffusion process—The radiocarbon record revisited

(2018) C Manen et al.   RADIOCARBON

Parallel palaeogenomic transects reveal complex genetic history of early European farmers

(2017) Mark Lipson et al.   NATURE

Why this revolution? Explaining the major technical shift in Southwestern Europe during the 7th millennium cal. BC

(2017) Grégor Marchand et al.   QUATERNARY INTERNATIONAL

The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods

(2017) Rui Martiniano et al.   PLoS Genetics

Ancient mitochondrial DNA from the middle neolithic necropolis of Obernai extends the genetic influence of the LBK to west of the Rhine

(2016) Maïté Rivollat et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe

(2016) Cosimo Posth et al.   CURRENT BIOLOGY

Investigating mitochondrial DNA relationships in Neolithic Western Europe through serial coalescent simulations

(2016) Maïté Rivollat et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Early farmers from across Europe directly descended from Neolithic Aegeans

(2016) Zuzana Hofmanová et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice

(2016) Alissa Mittnik et al.   PLoS One

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

(2015) Eppie R. Jones et al.   Nature Communications

When the Waves of European Neolithization Met: First Paleogenetic Evidence from Early Farmers in the Southern Paris Basin

(2015) Maïté Rivollat et al.   PLoS One

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

(2014) N. Rohland et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers

(2014) P. Skoglund et al.   SCIENCE

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes

(2013) Qiaomei Fu et al.   CURRENT BIOLOGY

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity

(2013) G. Brandt et al.   SCIENCE

2000 Years of Parallel Societies in Stone Age Central Europe

(2013) R. Bollongino et al.   SCIENCE

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Community differentiation and kinship among Europe's first farmers

(2012) R. A. Bentley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crohn's Disease and Genetic Hitchhiking at IBD5

(2011) C. D. Huff et al.   MOLECULAR BIOLOGY AND EVOLUTION

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

News from the west: Ancient DNA from a French megalithic burial chamber

(2010) Marie-France Deguilloux et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Biological, clinical and population relevance of 95 loci for blood lipids

(2010) Tanya M. Teslovich et al.   NATURE

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Associations and Interactions Between SNPs in the Alcohol Metabolizing Genes and Alcoholism Phenotypes in European Americans

(2009) Richard Sherva et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genetic Discontinuity Between Local Hunter-Gatherers and Central Europe's First Farmers

(2009) B. Bramanti et al.   SCIENCE

Evolutionary Dynamics of Human Toll-Like Receptors and Their Different Contributions to Host Defense

(2009) Luis B. Barreiro et al.   PLoS Genetics