HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing

(2015) Doori Park et al.   BMC GENOMICS

Heteroplasmic substitutions in the entire mitochondrial genomes of human colon cells detected by ultra-deep 454 sequencing

(2015) Katarzyna Skonieczna et al.   Forensic Science International-Genetics

Mitochondrial DNA heteroplasmy in the emerging field of massively parallel sequencing

(2015) Rebecca S. Just et al.   Forensic Science International-Genetics

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools

(2015) Jun Ding et al.   PLoS Genetics

Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma

(2015) Anita Kloss-Brandstätter et al.   PLoS One

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier

(2014) Daniel Navarro-Gomez et al.   BIOINFORMATICS

Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population

(2014) Shengting Li et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

mitoSAVE: Mitochondrial sequence analysis of variants in Excel

(2014) Jonathan L. King et al.   Forensic Science International-Genetics

BioJS: an open source JavaScript framework for biological data visualization

(2013) J. Gomez et al.   BIOINFORMATICS

Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA)

(2013) Alexander W. Röck et al.   Forensic Science International-Genetics

HAPLOFIND: A New Method for High-Throughput mtDNA Haplogroup Assignment

(2013) Dario Vianello et al.   HUMAN MUTATION

The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies

(2013) Hans-Jürgen Bandelt et al.   JOURNAL OF HUMAN GENETICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A “Copernican” Reassessment of the Human Mitochondrial DNA Tree from its Root

(2012) Doron M. Behar et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics

(2012) Hans-Jürgen Bandelt et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Comparing Phylogeny and the Predicted Pathogenicity of Protein Variations Reveals Equal Purifying Selection across the Global Human mtDNA Diversity

(2011) Luísa Pereira et al.   AMERICAN JOURNAL OF HUMAN GENETICS

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Current Next Generation Sequencing technology may not meet forensic standards

(2011) Hans-Jürgen Bandelt et al.   Forensic Science International-Genetics

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups

(2010) Anita Kloss-Brandstätter et al.   HUMAN MUTATION

MitoTool: A web server for the analysis and retrieval of human mitochondrial DNA sequence variations

(2010) Long Fan et al.   MITOCHONDRION

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

mtDNA Data Mining in GenBank Needs Surveying

(2009) Yong-Gang Yao et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock

(2009) Pedro Soares et al.   AMERICAN JOURNAL OF HUMAN GENETICS

MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences

(2008) Marty C. Brandon et al.   HUMAN MUTATION

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

(2008) Mannis van Oven et al.   HUMAN MUTATION

Distilling Artificial Recombinants from Large Sets of Complete mtDNA Genomes

(2008) Qing-Peng Kong et al.   PLoS One