Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin
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Title
Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 11, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2020-05-21
DOI
10.3389/fpls.2020.00646
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Note: Only part of the references are listed.- Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
- (2019) Mehrdad Hajibabaei et al. PLoS One
- Primer3_masker: integrating masking of template sequence with primer design software
- (2018) Triinu Kõressaar et al. BIOINFORMATICS
- Effect of food matrix and thermal processing on the performance of a normalised quantitative real-time PCR approach for lupine ( Lupinus albus ) detection as a potential allergenic food
- (2018) Caterina Villa et al. FOOD CHEMISTRY
- DNA-based techniques for authentication of processed food and food supplements
- (2018) Yat-Tung Lo et al. FOOD CHEMISTRY
- Herb and spice fraud; the drivers, challenges and detection
- (2018) Pamela Galvin-King et al. FOOD CONTROL
- Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)
- (2018) Kairi Raime et al. Frontiers in Plant Science
- Practical considerations for plant phylogenomics
- (2018) Michael R. McKain et al. Applications in Plant Sciences
- Lupin
- (2018) Theresa A. Bingemann et al. ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY
- Food metagenomics: Next generation sequencing identifies species mixtures and mislabeling within highly processed cod products
- (2017) Daniel Cardoso Carvalho et al. FOOD CONTROL
- FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
- (2017) Fanny-Dhelia Pajuste et al. Scientific Reports
- StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees
- (2017) Märt Roosaare et al. PeerJ
- Advances in DNA metabarcoding for food and wildlife forensic species identification
- (2016) Martijn Staats et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing
- (2016) Ravi Ranjan et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- A case study for assessing fish traceability in Egyptian aquafeed formulations using pyrosequencing and metabarcoding
- (2016) Asmaa Galal-Khallaf et al. FISHERIES RESEARCH
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
- (2016) Miguel I. Uyaguari-Diaz et al. Microbiome
- Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Microbiology
- Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing
- (2016) Jennifer N. Patro et al. mSphere
- Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads
- (2015) S. Evan Staton et al. BIOINFORMATICS
- CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
- (2015) Rachid Ounit et al. BMC GENOMICS
- The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
- (2015) J Paul Brooks et al. BMC MICROBIOLOGY
- Advanced DNA- and Protein-based Methods for the Detection and Investigation of Food Allergens
- (2015) M. Prado et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- Genome skimming for next-generation biodiversity analysis
- (2015) Steven Dodsworth TRENDS IN PLANT SCIENCE
- Identification of Crocus sativus and its Adulterants from Chinese Markets by using DNA Barcoding Technique
- (2015) Wei-juan Huang et al. Iranian Journal of Biotechnology
- GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists
- (2015) Lauris Kaplinski et al. GigaScience
- A DNA Mini-Barcoding System for Authentication of Processed Fish Products
- (2015) Shadi Shokralla et al. Scientific Reports
- All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing
- (2014) Fabian Ripp et al. BMC GENOMICS
- Ring trial validation of single and multiplex real-time PCR methods for the detection and quantification of the allergenic food ingredients sesame, almond, lupine and Brazil nut
- (2014) Hans-Ulrich Waiblinger et al. Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- The epidemiology of food allergy in Europe: a systematic review and meta-analysis
- (2013) B. I. Nwaru et al. ALLERGY
- A DNA mini-barcode for land plants
- (2013) Damon P. Little Molecular Ecology Resources
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns
- (2012) Megan L. Coghlan et al. PLoS Genetics
- Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
- (2011) Shannon C. K. Straub et al. AMERICAN JOURNAL OF BOTANY
- Development of a real-time PCR method for the simultaneous detection of soya and lupin mitochondrial DNA as markers for the presence of allergens in processed food
- (2011) Antonio M. Gomez Galan et al. FOOD CHEMISTRY
- Who is eating what: diet assessment using next generation sequencing
- (2011) FRANCOIS POMPANON et al. MOLECULAR ECOLOGY
- The Prevalence, Severity, and Distribution of Childhood Food Allergy in the United States
- (2011) R. S. Gupta et al. PEDIATRICS
- Lupin allergy: a hidden killer in the home
- (2010) M. L. Sanz et al. CLINICAL AND EXPERIMENTAL ALLERGY
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- A real-time PCR method for the detection and quantification of lupin flour in wheat flour-based matrices
- (2009) A. Scarafoni et al. FOOD CHEMISTRY
- Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle
- (2009) Uwe Rauwolf et al. MOLECULAR GENETICS AND GENOMICS
- GenBank
- (2009) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
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