Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

(2019) Mehrdad Hajibabaei et al.   PLoS One

Primer3_masker: integrating masking of template sequence with primer design software

(2018) Triinu Kõressaar et al.   BIOINFORMATICS

Effect of food matrix and thermal processing on the performance of a normalised quantitative real-time PCR approach for lupine ( Lupinus albus ) detection as a potential allergenic food

(2018) Caterina Villa et al.   FOOD CHEMISTRY

DNA-based techniques for authentication of processed food and food supplements

(2018) Yat-Tung Lo et al.   FOOD CHEMISTRY

Herb and spice fraud; the drivers, challenges and detection

(2018) Pamela Galvin-King et al.   FOOD CONTROL

Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)

(2018) Kairi Raime et al.   Frontiers in Plant Science

Practical considerations for plant phylogenomics

(2018) Michael R. McKain et al.   Applications in Plant Sciences

Lupin

(2018) Theresa A. Bingemann et al.   ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY

Food metagenomics: Next generation sequencing identifies species mixtures and mislabeling within highly processed cod products

(2017) Daniel Cardoso Carvalho et al.   FOOD CONTROL

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads

(2017) Fanny-Dhelia Pajuste et al.   Scientific Reports

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees

(2017) Märt Roosaare et al.   PeerJ

Advances in DNA metabarcoding for food and wildlife forensic species identification

(2016) Martijn Staats et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

(2016) Ravi Ranjan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A case study for assessing fish traceability in Egyptian aquafeed formulations using pyrosequencing and metabarcoding

(2016) Asmaa Galal-Khallaf et al.   FISHERIES RESEARCH

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples

(2016) Miguel I. Uyaguari-Diaz et al.   Microbiome

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

(2016) Emiley A. Eloe-Fadrosh et al.   Nature Microbiology

Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing

(2016) Jennifer N. Patro et al.   mSphere

Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads

(2015) S. Evan Staton et al.   BIOINFORMATICS

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

(2015) Rachid Ounit et al.   BMC GENOMICS

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

(2015) J Paul Brooks et al.   BMC MICROBIOLOGY

Advanced DNA- and Protein-based Methods for the Detection and Investigation of Food Allergens

(2015) M. Prado et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Identification of Crocus sativus and its Adulterants from Chinese Markets by using DNA Barcoding Technique

(2015) Wei-juan Huang et al.   Iranian Journal of Biotechnology

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

(2015) Lauris Kaplinski et al.   GigaScience

A DNA Mini-Barcoding System for Authentication of Processed Fish Products

(2015) Shadi Shokralla et al.   Scientific Reports

All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing

(2014) Fabian Ripp et al.   BMC GENOMICS

Ring trial validation of single and multiplex real-time PCR methods for the detection and quantification of the allergenic food ingredients sesame, almond, lupine and Brazil nut

(2014) Hans-Ulrich Waiblinger et al.   Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

The epidemiology of food allergy in Europe: a systematic review and meta-analysis

(2013) B. I. Nwaru et al.   ALLERGY

A DNA mini-barcode for land plants

(2013) Damon P. Little   Molecular Ecology Resources

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns

(2012) Megan L. Coghlan et al.   PLoS Genetics

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Development of a real-time PCR method for the simultaneous detection of soya and lupin mitochondrial DNA as markers for the presence of allergens in processed food

(2011) Antonio M. Gomez Galan et al.   FOOD CHEMISTRY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

The Prevalence, Severity, and Distribution of Childhood Food Allergy in the United States

(2011) R. S. Gupta et al.   PEDIATRICS

Lupin allergy: a hidden killer in the home

(2010) M. L. Sanz et al.   CLINICAL AND EXPERIMENTAL ALLERGY

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

A real-time PCR method for the detection and quantification of lupin flour in wheat flour-based matrices

(2009) A. Scarafoni et al.   FOOD CHEMISTRY

Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle

(2009) Uwe Rauwolf et al.   MOLECULAR GENETICS AND GENOMICS

GenBank

(2009) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH