CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Published 2015 View Full Article
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Title
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Authors
Keywords
Metagenomics, Genomics, Arm/chromosome assignments, Discriminative <em class=EmphasisTypeItalic >k</em>-mers, Sequence-specific <em class=EmphasisTypeItalic >k</em>-mers, Chromosome arm, Centromere
Journal
BMC GENOMICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-03-24
DOI
10.1186/s12864-015-1419-2
References
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- (2014) Derrick E Wood et al. GENOME BIOLOGY
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- (2012) Adam L Bazinet et al. BMC BIOINFORMATICS
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- (2009) Timothy J Close et al. BMC GENOMICS
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