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Title
Mechanisms of OCT4-SOX2 motif readout on nucleosomes
Authors
Keywords
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Journal
SCIENCE
Volume -, Issue -, Pages eabb0074
Publisher
American Association for the Advancement of Science (AAAS)
Online
2020-04-24
DOI
10.1126/science.abb0074
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Note: Only part of the references are listed.- Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding
- (2020) Jan Huertas et al. BIOPHYSICAL JOURNAL
- Biophysics of Chromatin Dynamics
- (2019) Beat Fierz et al. Annual Review of Biophysics
- DNA damage detection in nucleosomes involves DNA register shifting
- (2019) Syota Matsumoto et al. NATURE
- Structural Features of Transcription Factors Associating with Nucleosome Binding
- (2019) Meilin Fernandez Garcia et al. MOLECULAR CELL
- Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded
- (2019) Michael P. Meers et al. MOLECULAR CELL
- Non-Uniformity of Projection Distributions Attenuates Resolution in Cryo-EM
- (2019) Philip R. Baldwin et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors
- (2019) Sai Li et al. Cell Reports
- Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2
- (2019) Vikas Malik et al. Nature Communications
- Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
- (2019) Elias T Friman et al. eLife
- The interaction landscape between transcription factors and the nucleosome
- (2018) Fangjie Zhu et al. NATURE
- Defining TP53 pioneering capabilities with competitive nucleosome binding assays
- (2018) Xinyang Yu et al. GENOME RESEARCH
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data
- (2017) Mingxiang Teng et al. GENOME RESEARCH
- Capturing Structural Heterogeneity in Chromatin Fibers
- (2017) Babatunde Ekundayo et al. JOURNAL OF MOLECULAR BIOLOGY
- Catalytic-Independent Functions of PARP-1 Determine Sox2 Pioneer Activity at Intractable Genomic Loci
- (2017) Ziying Liu et al. MOLECULAR CELL
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
- (2017) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Molecular basis for the genome engagement by Sox proteins
- (2017) Linlin Hou et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy
- (2017) Katerina Naydenova et al. Nature Communications
- The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells
- (2017) Hamish W King et al. eLife
- Recent developments in the CCP-EM software suite
- (2017) Tom Burnley et al. Acta Crystallographica Section D-Structural Biology
- Gctf: Real-time CTF determination and correction
- (2016) Kai Zhang JOURNAL OF STRUCTURAL BIOLOGY
- Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
- (2015) Abdenour Soufi et al. CELL
- Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement
- (2015) Frank DiMaio et al. NATURE METHODS
- Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency
- (2015) Natalia Tapia et al. Scientific Reports
- Structural basis of pyrimidine-pyrimidone (6–4) photoproduct recognition by UV-DDB in the nucleosome
- (2015) Akihisa Osakabe et al. Scientific Reports
- QuasR: quantification and annotation of short reads in R
- (2014) Dimos Gaidatzis et al. BIOINFORMATICS
- Spec-seq: determining protein-DNA-binding specificity by sequencing
- (2014) G. D. Stormo et al. Briefings in Functional Genomics
- Nucleosome Structure and Function
- (2014) Robert K. McGinty et al. CHEMICAL REVIEWS
- A method for evaluating nucleosome stability with a protein-binding fluorescent dye
- (2014) Hiroyuki Taguchi et al. METHODS
- Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
- (2014) Clifford A. Meyer et al. NATURE REVIEWS GENETICS
- SRAdb: query and use public next-generation sequencing data from within R
- (2013) Yuelin Zhu et al. BMC BIOINFORMATICS
- Xmipp 3.0: An improved software suite for image processing in electron microscopy
- (2013) J.M. de la Rosa-Trevín et al. JOURNAL OF STRUCTURAL BIOLOGY
- A unique Oct4 interface is crucial for reprogramming to pluripotency
- (2013) Daniel Esch et al. NATURE CELL BIOLOGY
- High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
- (2013) Shaoxia Chen et al. ULTRAMICROSCOPY
- JLigand: a graphical tool for theCCP4 template-restraint library
- (2012) Andrey A. Lebedev et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- REFMAC5 for the refinement of macromolecular crystal structures
- (2011) Garib N. Murshudov et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Quantitative Determination of Oct4-Sox2 Heterodimer Formation with Nanog Promoter Element
- (2011) Tapan Kumar Mistri et al. BIOPHYSICAL JOURNAL
- Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions
- (2011) Alexander J. Ruthenburg et al. CELL
- Pioneer transcription factors: establishing competence for gene expression
- (2011) K. S. Zaret et al. GENES & DEVELOPMENT
- Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction
- (2011) Beat Fierz et al. Nature Chemical Biology
- Identification of genetic elements that autonomously determine DNA methylation states
- (2011) Florian Lienert et al. NATURE GENETICS
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Nucleosome-mediated cooperativity between transcription factors
- (2010) L. A. Mirny PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
- (2009) Michael A Hall et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A set of baculovirus transfer vectors for screening of affinity tags and parallel expression strategies
- (2008) Wassim Abdulrahman et al. ANALYTICAL BIOCHEMISTRY
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors
- (2008) Fabio Mohn et al. MOLECULAR CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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