Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement

Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies

(2015) E.H. Egelman et al.   STRUCTURE

Improved low-resolution crystallographic refinement with Phenix and Rosetta

(2013) Frank DiMaio et al.   NATURE METHODS

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM

(2013) Xueming Li et al.   NATURE METHODS

Structure of a pathogenic type 3 secretion system in action

(2013) Julia Radics et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-Resolution Comparative Modeling with RosettaCM

(2013) Yifan Song et al.   STRUCTURE

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

FOLD-EM: automated fold recognition in medium- and low-resolution (4–15 Å) electron density maps

(2012) Mitul Saha et al.   BIOINFORMATICS

Gorgon and pathwalking: Macromolecular modeling tools for subnanometer resolution density maps

(2012) Matthew L. Baker et al.   BIOPOLYMERS

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps

(2012) Steffen Lindert et al.   STRUCTURE

Outcome of the First Electron Microscopy Validation Task Force Meeting

(2012) Richard Henderson et al.   STRUCTURE

BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement

(2011) Nils Woetzel et al.   JOURNAL OF STRUCTURAL BIOLOGY

Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy

(2011) Anna-Clare Milazzo et al.   JOURNAL OF STRUCTURAL BIOLOGY

MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map

(2011) E. Tjioe et al.   NUCLEIC ACIDS RESEARCH

Three-Dimensional Model of Salmonella's Needle Complex at Subnanometer Resolution

(2011) O. Schraidt et al.   SCIENCE

GPU-enabled FREALIGN: Accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors

(2010) Xueming Li et al.   JOURNAL OF STRUCTURAL BIOLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Interactions of PAN's C-termini with archaeal 20S proteasome and implications for the eukaryotic proteasome–ATPase interactions

(2009) Yadong Yu et al.   EMBO JOURNAL

Refinement of Protein Structures into Low-Resolution Density Maps Using Rosetta

(2009) Frank DiMaio et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography

(2009) Leonardo G. Trabuco et al.   METHODS

Sharpening high resolution information in single particle electron cryomicroscopy

(2008) J.J. Fernández et al.   JOURNAL OF STRUCTURAL BIOLOGY

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

(2008) Gerrit Langer et al.   Nature Protocols

Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics

(2008) Leonardo G. Trabuco et al.   STRUCTURE