标题
Mechanisms of OCT4-SOX2 motif readout on nucleosomes
作者
关键词
-
出版物
SCIENCE
Volume -, Issue -, Pages eabb0074
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2020-04-24
DOI
10.1126/science.abb0074
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Nucleosomal DNA Dynamics Mediate Oct4 Pioneer Factor Binding
- (2020) Jan Huertas et al. BIOPHYSICAL JOURNAL
- Biophysics of Chromatin Dynamics
- (2019) Beat Fierz et al. Annual Review of Biophysics
- DNA damage detection in nucleosomes involves DNA register shifting
- (2019) Syota Matsumoto et al. NATURE
- Structural Features of Transcription Factors Associating with Nucleosome Binding
- (2019) Meilin Fernandez Garcia et al. MOLECULAR CELL
- Pioneer Factor-Nucleosome Binding Events during Differentiation Are Motif Encoded
- (2019) Michael P. Meers et al. MOLECULAR CELL
- Non-Uniformity of Projection Distributions Attenuates Resolution in Cryo-EM
- (2019) Philip R. Baldwin et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors
- (2019) Sai Li et al. Cell Reports
- Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2
- (2019) Vikas Malik et al. Nature Communications
- Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle
- (2019) Elias T Friman et al. eLife
- The interaction landscape between transcription factors and the nucleosome
- (2018) Fangjie Zhu et al. NATURE
- Defining TP53 pioneering capabilities with competitive nucleosome binding assays
- (2018) Xinyang Yu et al. GENOME RESEARCH
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data
- (2017) Mingxiang Teng et al. GENOME RESEARCH
- Capturing Structural Heterogeneity in Chromatin Fibers
- (2017) Babatunde Ekundayo et al. JOURNAL OF MOLECULAR BIOLOGY
- Catalytic-Independent Functions of PARP-1 Determine Sox2 Pioneer Activity at Intractable Genomic Loci
- (2017) Ziying Liu et al. MOLECULAR CELL
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
- (2017) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Molecular basis for the genome engagement by Sox proteins
- (2017) Linlin Hou et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy
- (2017) Katerina Naydenova et al. Nature Communications
- The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells
- (2017) Hamish W King et al. eLife
- Recent developments in the CCP-EM software suite
- (2017) Tom Burnley et al. Acta Crystallographica Section D-Structural Biology
- Gctf: Real-time CTF determination and correction
- (2016) Kai Zhang JOURNAL OF STRUCTURAL BIOLOGY
- Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming
- (2015) Abdenour Soufi et al. CELL
- Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement
- (2015) Frank DiMaio et al. NATURE METHODS
- Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency
- (2015) Natalia Tapia et al. Scientific Reports
- Structural basis of pyrimidine-pyrimidone (6–4) photoproduct recognition by UV-DDB in the nucleosome
- (2015) Akihisa Osakabe et al. Scientific Reports
- QuasR: quantification and annotation of short reads in R
- (2014) Dimos Gaidatzis et al. BIOINFORMATICS
- Spec-seq: determining protein-DNA-binding specificity by sequencing
- (2014) G. D. Stormo et al. Briefings in Functional Genomics
- Nucleosome Structure and Function
- (2014) Robert K. McGinty et al. CHEMICAL REVIEWS
- A method for evaluating nucleosome stability with a protein-binding fluorescent dye
- (2014) Hiroyuki Taguchi et al. METHODS
- Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
- (2014) Clifford A. Meyer et al. NATURE REVIEWS GENETICS
- SRAdb: query and use public next-generation sequencing data from within R
- (2013) Yuelin Zhu et al. BMC BIOINFORMATICS
- Xmipp 3.0: An improved software suite for image processing in electron microscopy
- (2013) J.M. de la Rosa-Trevín et al. JOURNAL OF STRUCTURAL BIOLOGY
- A unique Oct4 interface is crucial for reprogramming to pluripotency
- (2013) Daniel Esch et al. NATURE CELL BIOLOGY
- High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
- (2013) Shaoxia Chen et al. ULTRAMICROSCOPY
- JLigand: a graphical tool for theCCP4 template-restraint library
- (2012) Andrey A. Lebedev et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- REFMAC5 for the refinement of macromolecular crystal structures
- (2011) Garib N. Murshudov et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Quantitative Determination of Oct4-Sox2 Heterodimer Formation with Nanog Promoter Element
- (2011) Tapan Kumar Mistri et al. BIOPHYSICAL JOURNAL
- Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions
- (2011) Alexander J. Ruthenburg et al. CELL
- Pioneer transcription factors: establishing competence for gene expression
- (2011) K. S. Zaret et al. GENES & DEVELOPMENT
- Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction
- (2011) Beat Fierz et al. Nature Chemical Biology
- Identification of genetic elements that autonomously determine DNA methylation states
- (2011) Florian Lienert et al. NATURE GENETICS
- PHENIX: a comprehensive Python-based system for macromolecular structure solution
- (2010) Paul D. Adams et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Nucleosome-mediated cooperativity between transcription factors
- (2010) L. A. Mirny PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
- (2009) Michael A Hall et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A set of baculovirus transfer vectors for screening of affinity tags and parallel expression strategies
- (2008) Wassim Abdulrahman et al. ANALYTICAL BIOCHEMISTRY
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors
- (2008) Fabio Mohn et al. MOLECULAR CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now