DNA N6-Methyladenine Modification in Plant Genomes—A Glimpse into Emerging Epigenetic Code

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

Critical function of DNA methyltransferase 1 in tomato development and regulation of the DNA methylome and transcriptome

(2019) Yu Yang et al.   Journal of Integrative Plant Biology

An Adversarial DNA N6-Methyladenine-Sensor Network Preserves Polycomb Silencing

(2019) Soo-Mi Kweon et al.   MOLECULAR CELL

DNAmod: the DNA modification database

(2019) Ankur Jai Sood et al.   Journal of Cheminformatics

Adenine Methylation in Drosophila Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes

(2019) Kinnary Shah et al.   G3-Genes Genomes Genetics

MM-6mAPred: identifying DNA N6-methyladenine sites based on Markov model

(2019) Cong Pian et al.   BIOINFORMATICS

iDNA6mA (5-step rule): Identification of DNA N6-methyladenine sites in the rice genome by intelligent computational model via Chou's 5-step rule

(2019) Muhammad Tahir et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Epigenetic Methylations on N6-Adenine and N6-Adenosine with the same Input but Different Output

(2019) Zhiqing Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda

(2019) Shunmin He et al.   Nature Communications

Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data

(2019) Qian Liu et al.   Nature Communications

MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae

(2019) Zhao-Yu Liu et al.   Horticulture Research

iDNA6mA-Rice: A Computational Tool for Detecting N6-Methyladenine Sites in Rice

(2019) Hao Lv et al.   Frontiers in Genetics

Methylation content sensitive enzyme ddRAD (MCSeEd): a reference-free, whole genome profiling system to address cytosine/adenine methylation changes

(2019) Gianpiero Marconi et al.   Scientific Reports

csDMA: an improved bioinformatics tool for identifying DNA 6 mA modifications via Chou’s 5-step rule

(2019) Ze Liu et al.   Scientific Reports

i6mA-DNCP: Computational Identification of DNA N6-Methyladenine Sites in the Rice Genome Using Optimized Dinucleotide-Based Features

(2019) Liang Kong et al.   Genes

SNNRice6mA: A Deep Learning Method for Predicting DNA N6-Methyladenine Sites in Rice Genome

(2019) Haitao Yu et al.   Frontiers in Genetics

SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome

(2019) Shaherin Basith et al.   Molecular Therapy-Nucleic Acids

DNA N 6 -Adenine Methylation in Arabidopsis thaliana

(2018) Zhe Liang et al.   DEVELOPMENTAL CELL

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

N 6 -Methyladenine DNA Modification in the Human Genome

(2018) Chuan-Le Xiao et al.   MOLECULAR CELL

The m6A Reader ECT2 Controls Trichome Morphology by Affecting mRNA Stability in Arabidopsis

(2018) Lian-Huan Wei et al.   PLANT CELL

DNA methylation on N6-adenine in lepidopteran Bombyx mori

(2018) Xiaoyan Wang et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Adenine Methylation: New Epigenetic Marker of DNA and mRNA

(2018) Zhe Liang et al.   Molecular Plant

Adenine N6-methylation in diverse fungi

(2017) Michael F Seidl   NATURE GENETICS

Widespread adenine N6-methylation of active genes in fungi

(2017) Stephen J Mondo et al.   NATURE GENETICS

Selective detection of N6-methyladenine in DNA via metal ion-mediated replication and rolling circle amplification

(2017) Tingting Hong et al.   Chemical Science

DNA methylation on N6-adenine in mammalian embryonic stem cells

(2016) Tao P. Wu et al.   NATURE

MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing

(2016) Pohao Ye et al.   NUCLEIC ACIDS RESEARCH

N6-Methyladenine: A Potential Epigenetic Mark in Eukaryotic Genomes

(2015) Daniel Summerer   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

N6-methyladenine functions as a potential epigenetic mark in eukaryotes

(2015) Qinmiao Sun et al.   BIOESSAYS

DNA Methylation on N6-Adenine in C. elegans

(2015) Eric Lieberman Greer et al.   CELL

N6-Methyladenine DNA Modification in Drosophila

(2015) Guoqiang Zhang et al.   CELL

N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas

(2015) Ye Fu et al.   CELL

The AlkB Family of Fe(II)/α-Ketoglutarate-dependent Dioxygenases: Repairing Nucleic Acid Alkylation Damage and Beyond

(2015) Bogdan I. Fedeles et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DNA N6-methyladenine: a new epigenetic mark in eukaryotes?

(2015) Guan-Zheng Luo et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Motif-based analysis of large nucleotide data sets using MEME-ChIP

(2014) Wenxiu Ma et al.   Nature Protocols

Drosophila genomic methylation: new evidence and new questions

(2014) Thomas L Dunwell et al.   Epigenomics

Methylated nucleosides in tRNA and tRNA methyltransferases

(2014) Hiroyuki Hori   Frontiers in Genetics

DNA methylation: roles in mammalian development

(2013) Zachary D. Smith et al.   NATURE REVIEWS GENETICS

Dnmt2-dependent methylomes lack defined DNA methylation patterns

(2013) G. Raddatz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Novel AlkB Dioxygenases—Alternative Models for In Silico and In Vivo Studies

(2012) Damian Mielecki et al.   PLoS One

Epigenetic modifications in plants: an evolutionary perspective

(2011) Suhua Feng et al.   CURRENT OPINION IN PLANT BIOLOGY

Enzymatic Deamination of the Epigenetic BaseN-6-Methyladenine

(2011) Siddhesh S. Kamat et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

Genome-wide high throughput analysis of DNA methylation in eukaryotes

(2008) Kyle R. Pomraning et al.   METHODS