i6mA-DNCP: Computational Identification of DNA N6-Methyladenine Sites in the Rice Genome Using Optimized Dinucleotide-Based Features

i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome

(2019) Wei Chen et al.   BIOINFORMATICS

iDNA6mA (5-step rule): Identification of DNA N6-methyladenine sites in the rice genome by intelligent computational model via Chou's 5-step rule

(2019) Muhammad Tahir et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae

(2019) Zhao-Yu Liu et al.   Horticulture Research

iDNA6mA-Rice: A Computational Tool for Detecting N6-Methyladenine Sites in Rice

(2019) Hao Lv et al.   Frontiers in Genetics

Prediction of DNase I hypersensitive sites in plant genome using multiple modes of pseudo components

(2018) Shanxin Zhang et al.   ANALYTICAL BIOCHEMISTRY

DNA N 6 -Adenine Methylation in Arabidopsis thaliana

(2018) Zhe Liang et al.   DEVELOPMENTAL CELL

iRSpot-PDI: Identification of recombination spots by incorporating dinucleotide property diversity information into Chou's pseudo components

(2018) Lichao Zhang et al.   GENOMICS

iDNA6mA-PseKNC: Identifying DNA N 6 -methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC

(2018) Pengmian Feng et al.   GENOMICS

iRSpot-ADPM: Identify recombination spots by incorporating the associated dinucleotide product model into Chou’s pseudo components

(2018) Lichao Zhang et al.   JOURNAL OF THEORETICAL BIOLOGY

pDHS-ELM: computational predictor for plant DNase I hypersensitive sites based on extreme learning machines

(2018) Shanxin Zhang et al.   MOLECULAR GENETICS AND GENOMICS

Integration of deep feature representations and handcrafted features to improve the prediction of N 6 -methyladenosine sites

(2018) Leyi Wei et al.   NEUROCOMPUTING

4mCPred: Machine Learning Methods for DNA N4-methylcytosine sites Prediction

(2018) Wenying He et al.   BIOINFORMATICS

pDHS-DSET: Prediction of DNase I hypersensitive sites in plant genome using DS evidence theory

(2018) Shanxin Zhang et al.   ANALYTICAL BIOCHEMISTRY

N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses

(2018) Qian Zhang et al.   Molecular Plant

DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress

(2017) Bing Yao et al.   Nature Communications

Detecting N6-methyladenosine sites from RNA transcriptomes using ensemble Support Vector Machines

(2017) Wei Chen et al.   Scientific Reports

DNA methylation on N6-adenine in mammalian embryonic stem cells

(2016) Tao P. Wu et al.   NATURE

SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features

(2016) Yuan Zhou et al.   NUCLEIC ACIDS RESEARCH

Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig

(2016) Jianzhao Liu et al.   Nature Communications

iRSpot-DACC: a computational predictor for recombination hot/cold spots identification based on dinucleotide-based auto-cross covariance

(2016) Bingquan Liu et al.   Scientific Reports

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

DNA Methylation on N6-Adenine in C. elegans

(2015) Eric Lieberman Greer et al.   CELL

N6-Methyladenine DNA Modification in Drosophila

(2015) Guoqiang Zhang et al.   CELL

N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas

(2015) Ye Fu et al.   CELL

Using weighted features to predict recombination hotspots in Saccharomyces cerevisiae

(2015) Guoqing Liu et al.   JOURNAL OF THEORETICAL BIOLOGY

DNA N6-methyladenine: a new epigenetic mark in eukaryotes?

(2015) Guan-Zheng Luo et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications

(2015) Magdalena J Koziol et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications

(2015) Magdalena J Koziol et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions

(2014) Wei Chen et al.   BIOINFORMATICS

DNA methylation: roles in mammalian development

(2013) Zachary D. Smith et al.   NATURE REVIEWS GENETICS

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS