The Analysis of the Editing Defects in the dyw2 Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins

Delineation of pentatricopeptide repeat codes for target RNA prediction

(2019) Junjie Yan et al.   NUCLEIC ACIDS RESEARCH

The expansion and diversification of pentatricopeptide repeat RNA editing factors in plants

(2019) Bernard Gutmann et al.   Molecular Plant

Plant organellar RNA editing: what 30 years of research has revealed

(2019) Ian D. Small et al.   PLANT JOURNAL

Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria

(2018) Alejandro A. Edera et al.   PLANT MOLECULAR BIOLOGY

The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids

(2018) Hannes Ruwe et al.   NEW PHYTOLOGIST

Comprehensive prediction of target RNA editing sites for PLS-class PPR proteins in Arabidopsis thaliana

(2018) Takehito Kobayashi et al.   PLANT AND CELL PHYSIOLOGY

Effects of RNA structure and salt concentration on the affinity and kinetics of interactions between pentatricopeptide repeat proteins and their RNA ligands

(2018) James J. McDermott et al.   PLoS One

A protein with an unusually short PPR domain, MEF8, affects editing at over 60 Arabidopsis mitochondrial C targets of RNA editing

(2017) Michael F. Diaz et al.   PLANT JOURNAL

Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria

(2017) Damien Guillaumot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple PPR protein interactions are involved in the RNA editing system inArabidopsismitochondria and plastids

(2017) Nuria Andrés-Colás et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-binding specificity landscape of the pentatricopeptide repeat protein PPR10

(2017) Rafael G. Miranda et al.   RNA

A PPR protein in the PLS subfamily stabilizes the 5′-end of processedrpl16mRNAs in maize chloroplasts

(2016) Kamel Hammani et al.   NUCLEIC ACIDS RESEARCH

SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

(2016) Cornelia M. Hooper et al.   NUCLEIC ACIDS RESEARCH

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants

(2016) Shifeng Cheng et al.   PLANT JOURNAL

Distinct role ofArabidopsismitochondrial P-type pentatricopeptide repeat protein-modulating editing protein, PPME, innad1RNA editing

(2016) Kuan-Chieh Leu et al.   RNA Biology

Specific RNA Recognition by Designer Pentatricopeptide Repeat Protein

(2015) Cuicui Shen et al.   Molecular Plant

MEF13 Requires MORF3 and MORF8 for RNA Editing at Eight Targets in Mitochondrial mRNAs in Arabidopsis thaliana

(2015) Franziska Glass et al.   Molecular Plant

Predictable Alteration of Sequence Recognition by RNA Editing Factors from Arabidopsis

(2015) Peter Kindgren et al.   PLANT CELL

Development of Gateway Binary Vector Series with Four Different Selection Markers for the Liverwort Marchantia polymorpha

(2015) Kimitsune Ishizaki et al.   PLoS One

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Cytidine Deaminase Motifs within the DYW Domain of Two Pentatricopeptide Repeat-containing Proteins Are Required for Site-specific Chloroplast RNA Editing

(2014) Jessica A. Wagoner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing ofndhD-1

(2014) Clément Boussardon et al.   NEW PHYTOLOGIST

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing

(2014) Kenji Okuda et al.   PLANT JOURNAL

Organelle transcriptomes: products of a deconstructed genome

(2013) Ian D Small et al.   CURRENT OPINION IN MICROBIOLOGY

Structural basis for the modular recognition of single-stranded RNA by PPR proteins

(2013) Ping Yin et al.   NATURE

Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria

(2013) Mizuho Ichinose et al.   PLANT AND CELL PHYSIOLOGY

Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

(2013) Yusuke Yagi et al.   PLoS One

Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors

(2013) Mizuki Takenaka et al.   PLoS One

Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles

(2013) Jean Colcombet et al.   RNA Biology

Comprehensive High-Resolution Analysis of the Role of an Arabidopsis Gene Family in RNA Editing

(2013) Stéphane Bentolila et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids

(2012) C. Boussardon et al.   PLANT CELL

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

(2012) M. Takenaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

The Pentatricopeptide Repeat Protein OTP87 Is Essential for RNA Editing ofnad7andatp1Transcripts inArabidopsisMitochondria

(2011) Kamel Hammani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Arabidopsis Mitochondria-Localized Pentatricopeptide Repeat Protein PGN Functions in Defense against Necrotrophic Fungi and Abiotic Stress Tolerance

(2011) K. Laluk et al.   PLANT PHYSIOLOGY

Reverse Genetic Screening Identifies Five E-class PPR Proteins Involved in RNA Editing in Mitochondria ofArabidopsis thaliana

(2010) Mizuki Takenaka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

(2010) Felix Grewe et al.   NUCLEIC ACIDS RESEARCH

The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript

(2010) Eiji Tasaki et al.   PLANT JOURNAL

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1

(2010) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

(2010) J. Prikryl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture

(2008) Patrick Armengaud et al.   PLANT JOURNAL

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

(2008) R. Williams-Carrier et al.   RNA