Delineation of pentatricopeptide repeat codes for target RNA prediction
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Title
Delineation of pentatricopeptide repeat codes for target RNA prediction
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-02-01
DOI
10.1093/nar/gkz075
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Note: Only part of the references are listed.- Molecular Control of Male Fertility for Crop Hybrid Breeding
- (2018) Yu-Jin Kim et al. TRENDS IN PLANT SCIENCE
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- (2018) Jinbo Huang et al. Protein & Cell
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- (2017) Zhi Liu et al. JOURNAL OF EXPERIMENTAL BOTANY
- RNA-binding specificity landscapes of designer pentatricopeptide repeat proteins elucidate principles of PPR–RNA interactions
- (2017) Rafael G Miranda et al. NUCLEIC ACIDS RESEARCH
- PPR-SMR protein SOT1 has RNA endonuclease activity
- (2017) Wen Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA-binding specificity landscape of the pentatricopeptide repeat protein PPR10
- (2017) Rafael G. Miranda et al. RNA
- De-coding and re-coding RNA recognition by PUF and PPR repeat proteins
- (2016) Traci M Tanaka Hall CURRENT OPINION IN STRUCTURAL BIOLOGY
- A PPR protein in the PLS subfamily stabilizes the 5′-end of processedrpl16mRNAs in maize chloroplasts
- (2016) Kamel Hammani et al. NUCLEIC ACIDS RESEARCH
- The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize
- (2016) Reimo Zoschke et al. PLANT JOURNAL
- Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants
- (2016) Shifeng Cheng et al. PLANT JOURNAL
- SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana
- (2016) Wenjuan Wu et al. PLANT JOURNAL
- The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript
- (2016) Nader Aryamanesh et al. PLANT PHYSIOLOGY
- aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events
- (2016) Thomas Harrison et al. PLoS One
- Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins
- (2016) Cuicui Shen et al. Nature Communications
- An overview of pentatricopeptide repeat proteins and their applications
- (2015) Sam Manna BIOCHIMIE
- Engineering reprogrammable RNA-binding proteins for study and manipulation of the transcriptome
- (2015) Zhanar Abil et al. Molecular BioSystems
- Specific RNA Recognition by Designer Pentatricopeptide Repeat Protein
- (2015) Cuicui Shen et al. Molecular Plant
- AEF1/MPR25 is implicated in RNA editing of plastidatpFand mitochondrialnad5, and also promotesatpFsplicing in Arabidopsis and rice
- (2015) Aaron Yap et al. PLANT JOURNAL
- The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of MitochondrialNADH Dehydrogenase Subunit7Intron 2 in Arabidopsis
- (2015) Wei-Yu Hsieh et al. PLANT PHYSIOLOGY
- Pentatricopeptide-repeat family protein RF6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility
- (2015) Wenchao Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering RNA-binding proteins with diverse activities
- (2015) Huanhuan Wei et al. Wiley Interdisciplinary Reviews-RNA
- The design and structural characterization of a synthetic pentatricopeptide repeat protein
- (2015) Benjamin S. Gully et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Pentatricopeptide Repeat Proteins in Plants
- (2014) Alice Barkan et al. Annual Review of Plant Biology
- Arabidopsis pentatricopeptide repeat protein SOAR1 plays a critical role in abscisic acid signalling
- (2014) Chao Mei et al. JOURNAL OF EXPERIMENTAL BOTANY
- A Novel Chloroplast-Localized Pentatricopeptide Repeat Protein Involved in Splicing Affects Chloroplast Development and Abiotic Stress Response in Rice
- (2014) Junjie Tan et al. Molecular Plant
- The Rice Restorer Rf4 for Wild-Abortive Cytoplasmic Male Sterility Encodes a Mitochondrial-Localized PPR Protein that Functions in Reduction of WA352 Transcripts
- (2014) Huiwu Tang et al. Molecular Plant
- A protein-RNA specificity code enables targeted activation of an endogenous human transcript
- (2014) Zachary T Campbell et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Small kernel 1encodes a pentatricopeptide repeat protein required for mitochondrialnad7transcript editing and seed development in maize(Zea mays)and rice(Oryza sativa)
- (2014) Xiao-Jie Li et al. PLANT JOURNAL
- An artificial PPR scaffold for programmable RNA recognition
- (2014) Sandrine Coquille et al. Nature Communications
- Structural basis for the modular recognition of single-stranded RNA by PPR proteins
- (2013) Ping Yin et al. NATURE
- Structural basis for RNA recognition by a dimeric PPR-protein complex
- (2013) Jiyuan Ke et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Empty Pericarp5 Encodes a Pentatricopeptide Repeat Protein That Is Required for Mitochondrial RNA Editing and Seed Development in Maize
- (2013) Y.-J. Liu et al. PLANT CELL
- The potential for manipulating RNA with pentatricopeptide repeat proteins
- (2013) Yusuke Yagi et al. PLANT JOURNAL
- Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants
- (2013) Yusuke Yagi et al. PLoS One
- Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors
- (2013) Mizuki Takenaka et al. PLoS One
- Pentatricopeptide repeats
- (2013) Aleksandra Filipovska et al. RNA Biology
- PPR2263, a DYW-Subgroup Pentatricopeptide Repeat Protein, Is Required for Mitochondrial nad5 and cob Transcript Editing, Mitochondrion Biogenesis, and Maize Growth
- (2012) D. Sosso et al. PLANT CELL
- The Rice Pentatricopeptide Repeat Protein RF5 Restores Fertility in Hong-Lian Cytoplasmic Male-Sterile Lines via a Complex with the Glycine-Rich Protein GRP162
- (2012) J. Hu et al. PLANT CELL
- SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism
- (2012) Qiang Zhu et al. PLANT JOURNAL
- A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins
- (2012) Alice Barkan et al. PLoS Genetics
- EMBRYONIC FACTOR 19 Encodes a Pentatricopeptide Repeat Protein that is Essential for the Initiation of Zygotic Embryogenesis in Arabidopsis
- (2011) Dali Yu et al. Journal of Integrative Plant Biology
- Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility
- (2008) M. Uyttewaal et al. PLANT CELL
- CLB19, a pentatricopeptide repeat protein required for editing ofrpoAandclpPchloroplast transcripts
- (2008) Anne-Laure Chateigner-Boutin et al. PLANT JOURNAL
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