SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations

Identification of Regulatory and Cargo Proteins of Endosomal and Secretory Pathways inArabidopsis thalianaby Proteomic Dissection

(2015) William Heard et al.   MOLECULAR & CELLULAR PROTEOMICS

PGSB PlantsDB: updates to the database framework for comparative plant genome research

(2015) Manuel Spannagl et al.   NUCLEIC ACIDS RESEARCH

Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)

(2015) Cornelia M. Hooper et al.   PLANT AND CELL PHYSIOLOGY

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression

(2015) Yuichi Aoki et al.   PLANT AND CELL PHYSIOLOGY

Nuclear membrane localization during pollen development and apex-focused polarity establishment of SYP124/125 during pollen germination in Arabidopsis thaliana

(2015) Mie Ichikawa et al.   Plant Reproduction

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

(2014) Cornelia M. Hooper et al.   BIOINFORMATICS

Deciphering Thylakoid Sub-compartments using a Mass Spectrometry-based Approach

(2014) Martino Tomizioli et al.   MOLECULAR & CELLULAR PROTEOMICS

Retracted: Three BUB1 and BUBR1/MAD3-related spindle assembly checkpoint proteins are required for accurate mitosis in Arabidopsis

(2014) Laetitia Paganelli et al.   NEW PHYTOLOGIST

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

The membrane proteome of stroma thylakoids fromArabidopsis thalianastudied by successive in-solution and in-gel digestion

(2014) Lan Yin et al.   PHYSIOLOGIA PLANTARUM

The plant glycosyltransferase clone collection for functional genomics

(2014) Jeemeng Lao et al.   PLANT JOURNAL

Trehalose metabolism in plants

(2014) John Edward Lunn et al.   PLANT JOURNAL

Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production

(2014) A. Arnold et al.   PLANT PHYSIOLOGY

Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family

(2014) Sandra K. Tanz et al.   Frontiers in Plant Science

Rice DB: anOryzaInformation Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis

(2013) Reena Narsai et al.   PLANT JOURNAL

A method for accounting for maintenance costs in flux balance analysis improves the prediction of plant cell metabolic phenotypes under stress conditions

(2013) C. Y. Maurice Cheung et al.   PLANT JOURNAL

MASCP gator: an overview of the Arabidopsis proteomic aggregation portal

(2013) Gregory W. Mann et al.   Frontiers in Plant Science

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

(2012) Sandra K. Tanz et al.   NUCLEIC ACIDS RESEARCH

Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis

(2012) H. T. Parsons et al.   PLANT PHYSIOLOGY

The Functional Network of the Arabidopsis Plastoglobule Proteome Based on Quantitative Proteomics and Genome-Wide Coexpression Analysis

(2012) P. K. Lundquist et al.   PLANT PHYSIOLOGY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity

(2011) S. Mintz-Oron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

C4GEM, a Genome-Scale Metabolic Model to Study C4 Plant Metabolism

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data

(2010) H. J. Joshi et al.   PLANT PHYSIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS