Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing ofndhD-1

(2014) Clément Boussardon et al.   NEW PHYTOLOGIST

Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing

(2014) Fan Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsischloroplast quantitative editotype

(2013) Hannes Ruwe et al.   FEBS LETTERS

Mutagenesis of Individual Pentatricopeptide Repeat Motifs Affects RNA Binding Activity and Reveals Functional Partitioning of Arabidopsis PROTON GRADIENT REGULATION3

(2013) S. Fujii et al.   PLANT CELL

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing

(2013) Anne-Laure Chateigner-Boutin et al.   PLANT JOURNAL

The potential for manipulating RNA with pentatricopeptide repeat proteins

(2013) Yusuke Yagi et al.   PLANT JOURNAL

Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

(2013) Yusuke Yagi et al.   PLoS One

Improved Computational Target Site Prediction for Pentatricopeptide Repeat RNA Editing Factors

(2013) Mizuki Takenaka et al.   PLoS One

An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize

(2013) T. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles

(2013) Jean Colcombet et al.   RNA Biology

Pentatricopeptide repeat proteins involved in plant organellar RNA editing

(2013) Yusuke Yagi et al.   RNA Biology

Comprehensive High-Resolution Analysis of the Role of an Arabidopsis Gene Family in RNA Editing

(2013) Stéphane Bentolila et al.   PLoS Genetics

Nuclear DYW-Type PPR Gene Families Diversify with Increasing RNA Editing Frequencies in Liverwort and Moss Mitochondria

(2012) Mareike Rüdinger et al.   JOURNAL OF MOLECULAR EVOLUTION

A pentatricopeptide repeat protein acts as a site-specificity factor at multiple RNA editing sites with unrelated cis -acting elements in plastids

(2012) Kenji Okuda et al.   NUCLEIC ACIDS RESEARCH

Mechanistic Insight into Pentatricopeptide Repeat Proteins as Sequence-Specific RNA-Binding Proteins for Organellar RNAs in Plants

(2012) T. Nakamura et al.   PLANT AND CELL PHYSIOLOGY

Two Interacting Proteins Are Necessary for the Editing of the NdhD-1 Site in Arabidopsis Plastids

(2012) C. Boussardon et al.   PLANT CELL

RiceMPR25encodes a pentatricopeptide repeat protein and is essential for RNA editing ofnad5transcripts in mitochondria

(2012) Takushi Toda et al.   PLANT JOURNAL

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

(2012) S. Bentolila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

(2012) M. Takenaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

(2012) Alice Barkan et al.   PLoS Genetics

The Pentatricopeptide Repeat Protein OTP87 Is Essential for RNA Editing ofnad7andatp1Transcripts inArabidopsisMitochondria

(2011) Kamel Hammani et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The evolution of RNA editing and pentatricopeptide repeat genes

(2011) Sota Fujii et al.   NEW PHYTOLOGIST

Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein

(2011) Keiko Kobayashi et al.   NUCLEIC ACIDS RESEARCH

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

(2011) S. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-type mitochondrial RNA editing in the protist Naegleria gruberi

(2011) M. Rudinger et al.   RNA

The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript

(2010) Eiji Tasaki et al.   PLANT JOURNAL

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

(2010) J. Prikryl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant RNA editing

(2010) Anne-Laure Chateigner-Boutin et al.   RNA Biology

Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts

(2009) K. Okuda et al.   PLANT CELL

A Study of New Arabidopsis Chloroplast RNA Editing Mutants Reveals General Features of Editing Factors and Their Target Sites

(2009) K. Hammani et al.   PLANT CELL

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs

(2009) M. Tillich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana

(2008) Anja Zehrmann et al.   MITOCHONDRION

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

(2008) R. Williams-Carrier et al.   RNA

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE

Genetic Architecture of Mitochondrial Editing in Arabidopsis thaliana

(2007) S. Bentolila et al.   GENETICS