Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution
Authors
Keywords
-
Journal
PeerJ
Volume 8, Issue -, Pages e8450
Publisher
PeerJ
Online
2020-02-06
DOI
10.7717/peerj.8450
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A strategy to characterize chlorophyll protein interaction in LIL3
- (2019) Astrid Elisabeth Mork-Jansson et al. Plant Methods
- The complete chloroplast genome sequence of watercress (Nasturtium officinale R. Br.): Genome organization, adaptive evolution and phylogenetic relationships in Cardamineae
- (2019) Chao Yan et al. GENE
- Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence
- (2019) In-Su Choi et al. Genome Biology and Evolution
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
- (2019) Stephan Greiner et al. NUCLEIC ACIDS RESEARCH
- Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome
- (2019) Deng-Feng Xie et al. Frontiers in Plant Science
- Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses
- (2018) Malte Mader et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Sequencing, Characterization, and Comparative Analyses of the Plastome of Caragana rosea var. rosea
- (2018) Mei Jiang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Resources for studies of iron walnut (Juglans sigillata) gene expression, genetic diversity, and evolution
- (2018) Xiaojia Feng et al. Tree Genetics & Genomes
- Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny
- (2018) Ying Wu et al. Frontiers in Plant Science
- Sequencing and Analysis of Strobilanthes cusia (Nees) Kuntze Chloroplast Genome Revealed the Rare Simultaneous Contraction and Expansion of the Inverted Repeat Region in Angiosperm
- (2018) Haimei Chen et al. Frontiers in Plant Science
- Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships
- (2018) Wei-Bing Fan et al. Frontiers in Plant Science
- The Complete Chloroplast Genomes of Six Ipomoea Species and Indel Marker Development for the Discrimination of Authentic Pharbitidis Semen (Seeds of I. nil or I. purpurea)
- (2018) Inkyu Park et al. Frontiers in Plant Science
- Phylogenomic and Comparative Analyses of Complete Plastomes of Croomia and Stemona (Stemonaceae)
- (2018) Qixiang Lu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Complete Chloroplast Genomes from Sanguisorba: Identity and Variation Among Four Species
- (2018) Xiang-Xiao Meng et al. MOLECULES
- Complete chloroplast genome sequences of Dioscorea: Characterization, genomic resources, and phylogenetic analyses
- (2018) Zhenyu Zhao et al. PeerJ
- The complete chloroplast genome of Aphelandra knappiae (Acanthaceae)
- (2018) Sunan Huang et al. Mitochondrial DNA Part B-Resources
- Unraveling relationships in the morphologically diverse and taxonomically challenging "justicioid" lineage (Acanthaceae: Justicieae)
- (2017) Carrie A. Kiel et al. TAXON
- Population Genetic Differentiation and Taxonomy of Three Closely Related Species of Saxifraga (Saxifragaceae) from Southern Tibet and the Hengduan Mountains
- (2017) Qing-Bo Gao et al. Frontiers in Plant Science
- Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis
- (2017) Sajjad Asaf et al. Scientific Reports
- Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae)
- (2016) Qiuyue Ma et al. CURRENT GENETICS
- Complete chloroplast genome sequences of Eucommia ulmoides: genome structure and evolution
- (2016) Lin Wang et al. Tree Genetics & Genomes
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
- Comparative analysis of microsatellites in chloroplast genomes of lower and higher plants
- (2015) Biju George et al. CURRENT GENETICS
- Plastid genome sequences of legumes reveal parallel inversions and multiple losses ofrps16in papilionoids
- (2015) Erika N. Schwarz et al. Journal of Systematics and Evolution
- ycf1, the most promising plastid DNA barcode of land plants
- (2015) Wenpan Dong et al. Scientific Reports
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Complete Chloroplast Genome Sequence of Poisonous and Medicinal Plant Datura stramonium: Organizations and Implications for Genetic Engineering
- (2014) Yang Yang et al. PLoS One
- THE NICHE CONSTRUCTION PERSPECTIVE: A CRITICAL APPRAISAL
- (2013) Thomas C. Scott-Phillips et al. EVOLUTION
- Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
- (2013) Mao-Lun Weng et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Predicting Plastid Marker Variation: Can Complete Plastid Genomes from Closely Related Species Help?
- (2013) Tiina Särkinen et al. PLoS One
- Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane
- (2013) S. Kikuchi et al. SCIENCE
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- The South American radiation ofLepechinia(Lamiaceae): phylogenetics, divergence times and evolution of dioecy
- (2012) Bryan T. Drew et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
- (2012) Wenpan Dong et al. PLoS One
- Complete Chloroplast Genome Sequences of Important Oilseed Crop Sesamum indicum L
- (2012) Dong-Keun Yi et al. PLoS One
- The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
- (2011) Susann Wicke et al. PLANT MOLECULAR BIOLOGY
- progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
- (2010) Aaron E. Darling et al. PLoS One
- Medicinal plants used in Northern Peru for reproductive problems and female health
- (2010) Rainer W Bussmann et al. Journal of Ethnobiology and Ethnomedicine
- Notes on the genus Dicliptera (Acanthaceae) in Eastern Africa
- (2010) Iain Darbyshire KEW BULLETIN
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA
- (2009) Thomas Borsch et al. PLANT SYSTEMATICS AND EVOLUTION
- Phylogenetic Relationships of Pinus Subsection Ponderosae Inferred from Rapidly Evolving cpDNA Regions
- (2009) David S. Gernandt et al. SYSTEMATIC BOTANY
- Toward a comprehensive understanding of phylogenetic relationships among lineages of Acanthaceae s.l. (Lamiales)
- (2008) L. A. McDade et al. AMERICAN JOURNAL OF BOTANY
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now