Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses

What can we do with 1000 plastid genomes?

(2017) Julian Tonti-Filippini et al.   PLANT JOURNAL

Development of Multiplexed Marker Sets to Identify the Most Relevant Poplar Species for Breeding

(2017) et al.   Forests

Phylogenetic studies and comparative chloroplast genome analyses elucidate the basal position of halophyte Nitraria sibirica (Nitrariaceae) in the Sapindales

(2017) Lu Lu et al.   Mitochondrial DNA Part A

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

(2016) Anna V. Williams et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

(2016) Hilke Schroeder et al.   PLoS One

Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding

(2016) Birgit Kersten et al.   PLoS One

Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.

(2016) Birte Pakull et al.   Conservation Genetics Resources

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recently evolved diversity and convergent radiations of rainforest mahoganies (Meliaceae) shed new light on the origins of rainforest hyperdiversity

(2015) Erik J. M. Koenen et al.   NEW PHYTOLOGIST

SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations

(2015) Alexis Dereeper et al.   NUCLEIC ACIDS RESEARCH

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV

(2014) Joey Shaw et al.   AMERICAN JOURNAL OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analysis of plastid and nuclear DNA data in plant phylogenetics—evaluation and improvement

(2014) Wei Wang et al.   Science China-Life Sciences

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

(2012) Chang Liu et al.   BMC GENOMICS

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Development of DNA-based methods to identify CITES-protected timber species: a case study in the Meliaceae family

(2011) Aki Michael Höltken et al.   HOLZFORSCHUNG

Testing species delimitation in sympatric species complexes: The case of an African tropical tree, Carapa spp. (Meliaceae)

(2011) Jérôme Duminil et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Chloroplast genomes of photosynthetic eukaryotes

(2011) Beverley R. Green   PLANT JOURNAL

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Molecular phylogenetics of Neotropical Cedreleae (mahogany family, Meliaceae) based on nuclear and plastid DNA sequences reveal multiple origins of “Cedrela odorata”

(2009) Alexandra N. Muellner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION