Complete chloroplast genome sequences of Dioscorea: Characterization, genomic resources, and phylogenetic analyses

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes

(2017) Chao Xu et al.   Frontiers in Plant Science

Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences

(2017) Wenpan Dong et al.   Frontiers in Plant Science

The Chloroplast Genome Sequence of Scutellaria baicalensis Provides Insight into Intraspecific and Interspecific Chloroplast Genome Diversity in Scutellaria

(2017) Dan Jiang et al.   Genes

Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses

(2017) Yun-peng Du et al.   Scientific Reports

Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

(2017) Sajjad Asaf et al.   Scientific Reports

Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales

(2016) Yang Luo et al.   Genome Biology and Evolution

Tree of life for the genera of Chinese vascular plants

(2016) Zhi-Duan Chen et al.   Journal of Systematics and Evolution

Phylogenomics and Plastome Evolution of Tropical Forest Grasses (Leptaspis, Streptochaeta: Poaceae)

(2016) Sean V. Burke et al.   Frontiers in Plant Science

Chloroplast Phylogenomic Inference of Green Algae Relationships

(2016) Linhua Sun et al.   Scientific Reports

A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the GenusCitrus

(2015) Jose Carbonell-Caballero et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology

(2015) Marcelo Rogalski et al.   Frontiers in Plant Science

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies

(2014) Cédric Mariac et al.   Molecular Ecology Resources

Molecular phylogeny of Dioscorea (Dioscoreaceae) in East and Southeast Asia

(2013) K.-M. Hsu et al.   BLUMEA

Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales

(2013) Wenpan Dong et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of Opuntia s.s. (Cactaceae): Clade delineation, geographic origins, and reticulate evolution

(2012) Lucas C. Majure et al.   AMERICAN JOURNAL OF BOTANY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

DNA Barcoding the Dioscorea in China, a Vital Group in the Evolution of Monocotyledon: Use of matK Gene for Species Discrimination

(2012) Xiao-Qin Sun et al.   PLoS One

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

The Evolutionary Root of Flowering Plants

(2012) Vadim V. Goremykin et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A Set of 100 Chloroplast DNA Primer Pairs to Study Population Genetics and Phylogeny in Monocotyledons

(2011) Nora Scarcelli et al.   PLoS One

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Molecularly imprinted layer-coated silica nanoparticles toward highly selective separation of active diosgenin from Dioscorea nipponica Makino

(2009) Chunxiao Zhai et al.   JOURNAL OF CHROMATOGRAPHY A

The front-end logistics of DNA barcoding: challenges and prospects

(2009) ALEX V. BORISENKO et al.   Molecular Ecology Resources

GenomeVx: simple web-based creation of editable circular chromosome maps

(2008) G. C. Conant et al.   BIOINFORMATICS

Homology in coding and non-coding DNA sequences: a parsimony perspective

(2008) Helga Ochoterena   PLANT SYSTEMATICS AND EVOLUTION

A framework for phylogenetic sequence alignment

(2008) David A. Morrison   PLANT SYSTEMATICS AND EVOLUTION

Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK

(2008) Kurt M. Neubig et al.   PLANT SYSTEMATICS AND EVOLUTION