Phylogeny of Chinese Allium Species in Section Daghestanica and Adaptive Evolution of Allium (Amaryllidaceae, Allioideae) Species Revealed by the Chloroplast Complete Genome

Comparative Analysis of the Chloroplast Genomes of the Chinese Endemic Genus Urophysa and Their Contribution to Chloroplast Phylogeny and Adaptive Evolution

(2018) Deng-Feng Xie et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution

(2018) Wan-Lin Dong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny

(2018) Ying Wu et al.   Frontiers in Plant Science

Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships

(2018) Wei-Bing Fan et al.   Frontiers in Plant Science

Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)

(2018) Mikhail A. Filyushin et al.   Mitochondrial DNA Part B-Resources

Characterization of the complete chloroplast genome of Allium prattii

(2018) Fang-Yu Jin et al.   Mitochondrial DNA Part B-Resources

Molecular adaptation in the world's deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod Hirondellea gigas

(2017) Yi Lan et al.   MOLECULAR ECOLOGY

Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny

(2017) Yiheng Hu et al.   Frontiers in Plant Science

Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response

(2017) Zdravka Ivanova et al.   Frontiers in Plant Science

Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae)

(2016) Michael R. McKain et al.   AMERICAN JOURNAL OF BOTANY

Physiological Functions of Cyclic Electron Transport Around Photosystem I in Sustaining Photosynthesis and Plant Growth

(2016) Wataru Yamori et al.   Annual Review of Plant Biology

Phylogeny of Allium L. subgenus Anguinum (G. Don. ex W.D.J. Koch) N. Friesen (Amaryllidaceae)

(2016) Tobias Herden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The complete plastid genome sequence of garlic Allium sativum L

(2016) Mikhail A. Filyushin et al.   Mitochondrial DNA Part B-Resources

Hunting and hallucinogens: The use psychoactive and other plants to improve the hunting ability of dogs

(2015) Bradley C. Bennett et al.   JOURNAL OF ETHNOPHARMACOLOGY

Comparative analysis of the complete chloroplast genome sequences of a normal male-fertile cytoplasm and two different cytoplasms conferring cytoplasmic male sterility in onion (Allium cepaL.)

(2015) S. Kim et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

Comparative analysis of complete chloroplast genome sequences of two tropical trees Machilus yunnanensis and Machilus balansae in the family Lauraceae

(2015) Yu Song et al.   Frontiers in Plant Science

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Comparative transcriptome resources of elevenPrimulinaspecies, a group of ‘stone plants’ from a biodiversity hot spot

(2014) Bin Ai et al.   Molecular Ecology Resources

The Translational Apparatus of Plastids and Its Role in Plant Development

(2014) Nadine Tiller et al.   Molecular Plant

THE NICHE CONSTRUCTION PERSPECTIVE: A CRITICAL APPRAISAL

(2013) Thomas C. Scott-Phillips et al.   EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae

(2012) P. Roxanne Steele et al.   AMERICAN JOURNAL OF BOTANY

Origins of New Genes and Evolution of Their Novel Functions

(2012) Yun Ding et al.   Annual Review of Ecology Evolution and Systematics

Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae)

(2012) Maxime Pauwels et al.   NEW PHYTOLOGIST

DAC Is Involved in the Accumulation of the Cytochrome b6/f Complex in Arabidopsis

(2012) J. Xiao et al.   PLANT PHYSIOLOGY

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China

(2010) Q.-Q. Li et al.   ANNALS OF BOTANY

Comparison of mitochondrial and chloroplast genome segments from three onion (Allium cepa L.) cytoplasm types and identification of a trans-splicing intron of cox2

(2010) Sunggil Kim et al.   CURRENT GENETICS

Changes in Rubisco Kinetics during the Evolution of C4 Photosynthesis in Flaveria (Asteraceae) Are Associated with Positive Selection on Genes Encoding the Enzyme

(2010) Maxim V. Kapralov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

Unparalleled GC content in the plastid DNA of Selaginella

(2009) David Roy Smith   PLANT MOLECULAR BIOLOGY

Mitochondrial Genome of the Colorless Green Alga Polytomella capuana: A Linear Molecule with an Unprecedented GC Content

(2008) D. R. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the western North American center of diversity

(2008) Nhu H. Nguyen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships in the orchid genus Serapias L. based on noncoding regions of the chloroplast genome

(2008) F. Bellusci et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

(2008) Per Erixon et al.   PLoS One