The Link Between the Ecology of the Prokaryotic Rare Biosphere and Its Biotechnological Potential

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria

(2019) Elham Karimi et al.   Scientific Reports

Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member

(2019) Bela Hausmann et al.   mBio

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

(2019) Elena Cerro‐Gálvez et al.   ENVIRONMENTAL MICROBIOLOGY

Hydrothermal vent protistan distribution along the Mariana arc suggests vent endemics may be rare and novel

(2019) Sheryl A. Murdock et al.   ENVIRONMENTAL MICROBIOLOGY

Automated structure prediction of trans-acyltransferase polyketide synthase products

(2019) Eric J. N. Helfrich et al.   Nature Chemical Biology

Actinobacteria and Cyanobacteria Diversity in Terrestrial Antarctic Microenvironments Evaluated by Culture-Dependent and Independent Methods

(2019) Adriana Rego et al.   Frontiers in Microbiology

Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host‐associated and free‐living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species

(2019) Sandra G. Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Ecotoxicity of phenol and cresols to aquatic organisms: A review

(2018) Weiyan Duan et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Ultrarare marine microbes contribute to key sulphur-related ecosystem functions

(2018) Dimitri Kalenitchenko et al.   MOLECULAR ECOLOGY

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Insights Into Culturomics of the Rumen Microbiome

(2018) Tamar Zehavi et al.   Frontiers in Microbiology

Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes

(2018) Karen G. Lloyd et al.   mSystems

Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge

(2018) Sean Ting-Shyang Wei et al.   mSystems

Rare symbionts may contribute to the resilience of coral–algal assemblages

(2017) Maren Ziegler et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates

(2016) Cheng-Ying Jiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The bright side of microbial dark matter: lessons learned from the uncultivated majority

(2016) Lindsey Solden et al.   CURRENT OPINION IN MICROBIOLOGY

Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

(2016) Bela Hausmann et al.   ISME Journal

Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort

(2016) Bibiana G. Crespo et al.   PLoS One

From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation

(2015) Sebastián Fuentes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physiological and Transcriptional Responses of Different Industrial Microbes at Near-Zero Specific Growth Rates

(2015) Onur Ercan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Normalization of environmental metagenomic DNA enhances the discovery of under-represented microbial community members

(2015) J.-B. Ramond et al.   LETTERS IN APPLIED MICROBIOLOGY

Evidence for an active rare biosphere within freshwater protists community

(2015) Didier Debroas et al.   MOLECULAR ECOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Rarity in aquatic microbes: placing protists on the map

(2015) Ramiro Logares et al.   RESEARCH IN MICROBIOLOGY

Response of the rare biosphere to environmental stressors in a highly diverse ecosystem (Zodletone spring, OK, USA)

(2015) Suzanne Coveley et al.   PeerJ

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Enhanced bioremediation of oil spills in the sea

(2014) Eliora Z Ron et al.   CURRENT OPINION IN BIOTECHNOLOGY

‘Rare biosphere’ bacteria as key phenanthrene degraders in coastal seawaters

(2014) Caroline Sauret et al.   ENVIRONMENTAL POLLUTION

Ciliates and the Rare Biosphere-Community Ecology and Population Dynamics

(2014) Thomas Weisse   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The Freshwater Sponge Ephydatia fluviatilis Harbours Diverse Pseudomonas Species (Gammaproteobacteria, Pseudomonadales) with Broad-Spectrum Antimicrobial Activity

(2014) Tina Keller-Costa et al.   PLoS One

Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges

(2014) Cristiane C. P. Hardoim et al.   Frontiers in Microbiology

Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean

(2013) KL Vergin et al.   AQUATIC MICROBIAL ECOLOGY

Quantitative physiology ofLactococcus lactisat extreme low-growth rates

(2013) Onur Ercan et al.   ENVIRONMENTAL MICROBIOLOGY

Alkane-degrading bacteria at the soil-litter interface: comparing isolates with T-RFLP-based community profiles

(2013) Julia Giebler et al.   FEMS MICROBIOLOGY ECOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Revealing the hidden functional diversity of an enzyme family

(2013) Karine Bastard et al.   Nature Chemical Biology

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel High-Rank Phylogenetic Lineages within a Sulfur Spring (Zodletone Spring, Oklahoma), Revealed Using a Combined Pyrosequencing-Sanger Approach

(2012) Noha Youssef et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Culturing captures members of the soil rare biosphere

(2012) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Targeted recovery of novel phylogenetic diversity from next-generation sequence data

(2012) Michael D J Lynch et al.   ISME Journal

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

Recent advances in engineering the central carbon metabolism of industrially important bacteria

(2012) Maria Papagianni   Microbial Cell Factories

Evidence for Selective Bacterial Community Structuring in the Freshwater Sponge Ephydatia fluviatilis

(2012) Rodrigo Costa et al.   MICROBIAL ECOLOGY

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The great screen anomaly—a new frontier in product discovery through functional metagenomics

(2011) David Matthias Ekkers et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees

(2011) Dongying Wu et al.   PLoS One

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes

(2010) David L. Kirchman et al.   ENVIRONMENTAL MICROBIOLOGY

Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia

(2010) Newton C.M. Gomes et al.   FEMS MICROBIOLOGY ECOLOGY

A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland

(2010) Michael Pester et al.   ISME Journal

Fine-Scale Bacterial Beta Diversity within a Complex Ecosystem (Zodletone Spring, OK, USA): The Role of the Rare Biosphere

(2010) Noha H. Youssef et al.   PLoS One

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From complete genome sequence to ‘complete’ understanding?

(2010) Michael Y. Galperin et al.   TRENDS IN BIOTECHNOLOGY

Hypotheses on the role of the protistan rare biosphere in a changing world

(2009) DA Caron et al.   AQUATIC MICROBIAL ECOLOGY

Quantifying the relative importance of niches and neutrality for coexistence in a model microbial system

(2009) Quan-Guo Zhang et al.   FUNCTIONAL ECOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere

(2008) M. S. Elshahed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Scratching the surface of the rare biosphere with ribosomal sequence tag primers

(2008) Josh D. Neufeld et al.   FEMS MICROBIOLOGY LETTERS