Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

Biodegradation as an important sink of aromatic hydrocarbons in the oceans

(2019) Belén González-Gaya et al.   Nature Geoscience

Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions

(2019) Maria Vila-Costa et al.   Scientific Reports

SnapShot: Microbial Hydrocarbon Bioremediation

(2018) Samantha Joye et al.   CELL

Mechanisms for rhamnolipids-mediated biodegradation of hydrophobic organic compounds

(2018) Zhuotong Zeng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biodegradation of marine oil spills in the Arctic with a Greenland perspective

(2018) Leendert Vergeynst et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pivotal Role of Snow Deposition and Melting Driving Fluxes of Polycyclic Aromatic Hydrocarbons at Coastal Livingston Island (Antarctica)

(2018) Paulo Casal et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Old before your time: Ancient carbon incorporation in contemporary aquatic foodwebs

(2017) François Guillemette et al.   LIMNOLOGY AND OCEANOGRAPHY

Effects of rhamnolipids on microorganism characteristics and applications in composting: A review

(2017) Binbin Shao et al.   MICROBIOLOGICAL RESEARCH

General baseline toxicity QSAR for nonpolar, polar and ionisable chemicals and their mixtures in the bioluminescence inhibition assay with Aliivibrio fischeri

(2017) Beate I. Escher et al.   Environmental Science-Processes & Impacts

Surface properties of SAR11 bacteria facilitate grazing avoidance

(2017) Ayelet Dadon-Pilosof et al.   Nature Microbiology

Dysregulation of photosynthetic genes in oceanic Prochlorococcus populations exposed to organic pollutants

(2017) Maria-Carmen Fernández-Pinos et al.   Scientific Reports

Cellular and Molecular Biological Approaches to Interpreting Ancient Biomarkers

(2016) Dianne K. Newman et al.   Annual Review of Earth and Planetary Sciences

Temporal trends of Persistent Organic Pollutants (POPs) in arctic air: 20 years of monitoring under the Arctic Monitoring and Assessment Programme (AMAP)

(2016) Hayley Hung et al.   ENVIRONMENTAL POLLUTION

Polycyclic aromatic hydrocarbons and PAH-related DNA adducts

(2016) Błaszczyk Ewa et al.   JOURNAL OF APPLIED GENETICS

High atmosphere–ocean exchange of semivolatile aromatic hydrocarbons

(2016) Belén González-Gaya et al.   Nature Geoscience

Rhamnolipids in perspective: gene regulatory pathways, metabolic engineering, production and technological forecasting

(2016) Leticia Dobler et al.   New Biotechnology

Responses of Microbial Communities to Hydrocarbon Exposures

(2016) Samantha Joye et al.   OCEANOGRAPHY

Deciphering ocean carbon in a changing world

(2016) Mary Ann Moran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toxicity of natural mixtures of organic pollutants in temperate and polar marine phytoplankton

(2016) Pedro Echeveste et al.   SCIENCE OF THE TOTAL ENVIRONMENT

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Out of Thin Air: Microbial Utilization of Atmospheric Gaseous Organics in the Surface Ocean

(2016) Jesús M. Arrieta et al.   Frontiers in Microbiology

Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill

(2016) Nina Dombrowski et al.   Nature Microbiology

Planetary Boundaries: Exploring the Safe Operating Space for Humanity

(2016) Johan Rockström et al.   ECOLOGY AND SOCIETY

Microbial succession in response to pollutants in batch-enrichment culture

(2016) Shuo Jiao et al.   Scientific Reports

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments

(2016) Sizhong Yang et al.   Scientific Reports

edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test: Fig. 1.

(2015) Emmanuel Dimont et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

PAHs reduce DNA synthesis and delay cell division in the widespread primary producer Prochlorococcus

(2015) Maria Isabel Cerezo et al.   ENVIRONMENTAL POLLUTION

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

(2015) Luis M Rodriguez-R et al.   ISME Journal

Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency

(2015) Marta Sebastián et al.   ISME Journal

“Unresolved Complex Mixture” (UCM): A brief history of the term and moving beyond it

(2015) John W. Farrington et al.   MARINE POLLUTION BULLETIN

Springtime dynamics, productivity and activity of prokaryotes in two Arctic fjords

(2015) A. M.-T. Piquet et al.   POLAR BIOLOGY

Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle

(2015) David J. Lea-Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SAR11 lipid renovation in response to phosphate starvation

(2015) Paul Carini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limited Reversibility of Bioconcentration of Hydrophobic Organic Chemicals in Phytoplankton

(2014) Albert A. Koelmans   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Complex Interplay between the P-Glycoprotein Multidrug Efflux Pump and the Membrane: Its Role in Modulating Protein Function

(2014) Frances Jane Sharom   Frontiers in Oncology

The “Degradative” and “Biological” Pumps Controls on the Atmospheric Deposition and Sequestration of Hexachlorocyclohexanes and Hexachlorobenzene in the North Atlantic and Arctic Oceans

(2013) Cristóbal J. Galbán-Malagón et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Polychlorinated Biphenyls, Hexachlorocyclohexanes and Hexachlorobenzene in Seawater and Phytoplankton from the Southern Ocean (Weddell, South Scotia, and Bellingshausen Seas)

(2013) Cristóbal J. Galbán-Malagón et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

(2013) Adam R Rivers et al.   ISME Journal

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

(2013) Cristian Del Fabbro et al.   PLoS One

Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing

(2012) Maria Vila-Costa et al.   ENVIRONMENTAL MICROBIOLOGY

Unresolved Complex Mixture (UCM) in Coastal Environments Is Derived from Fossil Sources

(2012) Helen K. White et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sizing up metatranscriptomics

(2012) Mary Ann Moran et al.   ISME Journal

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The oceanic biological pump modulates the atmospheric transport of persistent organic pollutants to the Arctic

(2012) Cristóbal Galbán-Malagón et al.   Nature Communications

Bacterial community transcription patterns during a marine phytoplankton bloom

(2011) Johanna M. Rinta-Kanto et al.   ENVIRONMENTAL MICROBIOLOGY

Cell size dependence of additive versus synergetic effects of UV radiation and PAHs on oceanic phytoplankton

(2011) Pedro Echeveste et al.   ENVIRONMENTAL POLLUTION

Persistent organic pollutants in Antarctica: current and future research priorities

(2011) Susan Bengtson Nash   JOURNAL OF ENVIRONMENTAL MONITORING

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: A review

(2010) Somnath Mallick et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Organic Pollutants in Coastal Waters, Sediments, and Biota: A Relevant Driver for Ecosystems During the Anthropocene?

(2010) Jordi Dachs et al.   Estuaries and Coasts

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

(2010) Scott M Gifford et al.   ISME Journal

Abundance and single-cell activity of bacterial groups in Antarctic coastal waters

(2010) Tiffany R. A. Straza et al.   LIMNOLOGY AND OCEANOGRAPHY

Production of Metabolites as Bacterial Responses to the Marine Environment

(2010) Carla C. C. R. De Carvalho et al.   Marine Drugs

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Cell size dependent toxicity thresholds of polycyclic aromatic hydrocarbons to natural and cultured phytoplankton populations

(2009) Pedro Echeveste et al.   ENVIRONMENTAL POLLUTION

Accumulation and Cycling of Polycyclic Aromatic Hydrocarbons in Zooplankton

(2009) Naiara Berrojalbiz et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Multidrug efflux pumps: The structures of prokaryotic ATP-binding cassette transporter efflux pumps and implications for our understanding of eukaryotic P-glycoproteins and homologues

(2009) Ian D. Kerr et al.   FEBS Journal

Evaluating the Flow-Cytometric Nucleic Acid Double-Staining Protocol in Realistic Situations of Planktonic Bacterial Death

(2008) T. Falcioni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessment of mixture toxicity of copper, cadmium, and phenanthrenequinone to the marine bacteriumVibrio fischeri

(2008) Wenxi Wang et al.   ENVIRONMENTAL TOXICOLOGY