Targeted recovery of novel phylogenetic diversity from next-generation sequence data
Published 2012 View Full Article
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Title
Targeted recovery of novel phylogenetic diversity from next-generation sequence data
Authors
Keywords
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Journal
ISME Journal
Volume 6, Issue 11, Pages 2067-2077
Publisher
Springer Nature
Online
2012-07-13
DOI
10.1038/ismej.2012.50
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- The Phylogenetic Diversity of Metagenomes
- (2011) Steven W. Kembel et al. PLoS One
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- (2011) B. J. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) J. Cameron Thrash et al. Scientific Reports
- Open resource metagenomics: a model for sharing metagenomic libraries
- (2011) J.D. Neufeld et al. Standards in Genomic Sciences
- Cytoscape 2.8: new features for data integration and network visualization
- (2010) M. E. Smoot et al. BIOINFORMATICS
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
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- PANGEA: pipeline for analysis of next generation amplicons
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- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Insidious effects of sequencing errors on perceived diversity in molecular surveys
- (2010) Ian A. Dickie NEW PHYTOLOGIST
- 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
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- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2009) Victor Kunin et al. ENVIRONMENTAL MICROBIOLOGY
- The 'rare biosphere': a reality check
- (2009) Jens Reeder et al. NATURE METHODS
- Accurate determination of microbial diversity from 454 pyrosequencing data
- (2009) Christopher Quince et al. NATURE METHODS
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- Bacterial Community Variation in Human Body Habitats Across Space and Time
- (2009) E. K. Costello et al. SCIENCE
- Scratching the surface of the rare biosphere with ribosomal sequence tag primers
- (2008) Josh D. Neufeld et al. FEMS MICROBIOLOGY LETTERS
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
- The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
- (2008) Pablo Yarza et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
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