Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

The hidden seasonality of the rare biosphere in coastal marine bacterioplankton

(2015) Laura Alonso-Sáez et al.   ENVIRONMENTAL MICROBIOLOGY

Electron Transfer Budgets and Kinetics of Abiotic Oxidation and Incorporation of Aqueous Sulfide by Dissolved Organic Matter

(2015) Zhi-Guo Yu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dominance of sulfur-fueled iron oxide reduction in low-sulfate freshwater sediments

(2015) Colleen M Hansel et al.   ISME Journal

Climate change and the permafrost carbon feedback

(2015) E. A. G. Schuur et al.   NATURE

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

High rates of anaerobic methane oxidation in freshwater wetlands reduce potential atmospheric methane emissions

(2015) K. E. A. Segarra et al.   Nature Communications

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

(2015) Craig W. Herbold et al.   Frontiers in Microbiology

Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil

(2014) Oliver Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Abundance and Diversity of Bacterial Nitrifiers and Denitrifiers and Their Functional Genes in Tannery Wastewater Treatment Plants Revealed by High-Throughput Sequencing

(2014) Zhu Wang et al.   PLoS One

Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production

(2014) S. B. Hodgkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean

(2013) KL Vergin et al.   AQUATIC MICROBIAL ECOLOGY

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

(2013) Albert Leopold Müller et al.   ISME Journal

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Pyrosequencing-Based Assessment of the Bacteria Diversity in Surface and Subsurface Peat Layers of a Northern Wetland, with Focus on Poorly Studied Phyla and Candidate Divisions

(2013) Yulia M. Serkebaeva et al.   PLoS One

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling

(2013) Ryan J. Newton et al.   PLoS One

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

(2012) M. Pester et al.   JOURNAL OF BACTERIOLOGY

Surface micro-topography causes hot spots of biogeochemical activity in wetland systems: A virtual modeling experiment

(2012) S. Frei et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Doubling of marine dinitrogen-fixation rates based on direct measurements

(2012) Tobias Großkopf et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Sulfate-reducing microorganisms in wetlands – fameless actors in carbon cycling and climate change

(2012) Michael Pester   Frontiers in Microbiology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Competing Formate- and Carbon Dioxide-Utilizing Prokaryotes in an Anoxic Methane-Emitting Fen Soil

(2011) Sindy Hunger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands

(2010) Doris Steger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland

(2010) Michael Pester et al.   ISME Journal

Geochemical controls on anaerobic organic matter decomposition in a northern peatland

(2010) Julia Beer et al.   LIMNOLOGY AND OCEANOGRAPHY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Viability and potential for immigration of airborne bacteria from Africa that reach high mountain lakes in Europe

(2009) Anna Hervàs et al.   ENVIRONMENTAL MICROBIOLOGY

Trophic links between fermenters and methanogens in a moderately acidic fen soil

(2009) Pia K. Wüst et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamics of redox processes in a minerotrophic fen exposed to a water table manipulation

(2009) Klaus-Holger Knorr et al.   GEODERMA

Impact of manipulated drought and heavy rainfall events on peat mineralization processes and source-sink functions of an acidic fen

(2009) Marco Reiche et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Impact of experimental drought and rewetting on redox transformations and methanogenesis in mesocosms of a northern fen soil

(2009) Klaus-Holger Knorr et al.   SOIL BIOLOGY & BIOCHEMISTRY

Humic acids as electron acceptors in wetland decomposition

(2009) Jason K. Keller et al.   SOIL BIOLOGY & BIOCHEMISTRY

Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil

(2009) Harold L. Drake et al.   Environmental Microbiology Reports

Anaerobic Consumers of Monosaccharides in a Moderately Acidic Fen

(2008) A. Hamberger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High similarity between bacterioneuston and airborne bacterial community compositions in a high mountain lake area

(2008) Anna Hervas et al.   FEMS MICROBIOLOGY ECOLOGY

N2O concentration and isotope signature along profiles provide deeper insight into the fate of N2O in soils†

(2008) Stefanie Daniela Goldberg et al.   ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES

The ecology and biotechnology of sulphate-reducing bacteria

(2008) Gerard Muyzer et al.   NATURE REVIEWS MICROBIOLOGY