Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish

A mini review on immune role of chemokines and its receptors in snakehead murrel Channa striatus

(2018) Prasanth Bhatt et al.   FISH & SHELLFISH IMMUNOLOGY

A comparative transcriptome approach for identification of molecular changes in Aphanomyces invadans infected Channa striatus

(2018) Venkatesh Kumaresan et al.   MOLECULAR BIOLOGY REPORTS

Gut microbiome of juvenile coregonid fishes: comparison of sympatric species and their F1 hybrids

(2017) NataliaL. Belkova et al.   Fundamental and Applied Limnology

Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes

(2016) Chenhong Zhang et al.   ISME Journal

Probiotics as beneficial microbes in aquaculture: an update on their multiple modes of action: a review

(2016) Mohammad Jalil Zorriehzahra et al.   VETERINARY QUARTERLY

Whole gut microbiome composition of damselfish and cardinalfish before and after reef settlement

(2016) Darren J. Parris et al.   PeerJ

Environment shapes the fecal microbiome of invasive carp species

(2016) Jessica J. Eichmiller et al.   Microbiome

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

A new view of the fish gut microbiome: Advances from next-generation sequencing

(2015) Mahdi Ghanbari et al.   AQUACULTURE

A multiple endpoint analysis of the effects of chronic exposure to sediment contaminated with Deepwater Horizon oil on juvenile Southern flounder and their associated microbiomes

(2015) Nancy J. Brown-Peterson et al.   AQUATIC TOXICOLOGY

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems

(2015) Daniel R. Garza et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

Diet strongly influences the gut microbiota of surgeonfishes

(2015) Sou Miyake et al.   MOLECULAR ECOLOGY

The microbiome of the urinary tract—a role beyond infection

(2015) Samantha A. Whiteside et al.   Nature Reviews Urology

Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA Gene

(2015) G. Estruch et al.   PLoS One

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

(2015) Laura Baldo et al.   PLoS One

The impact of rearing environment on the development of gut microbiota in tilapia larvae

(2015) Christos Giatsis et al.   Scientific Reports

Nonmedical Uses of Antibiotics: Time to Restrict Their Use?

(2015) Richard William Meek et al.   PLOS BIOLOGY

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

The functionality of the gastrointestinal microbiome in non-human animals

(2015) Irene Hanning et al.   Microbiome

Characterization of Deep Sea Fish Gut Bacteria with Antagonistic Potential, from Centroscyllium fabricii (Deep Sea Shark)

(2015) E. S. Bindiya et al.   Probiotics and Antimicrobial Proteins

Evolution of probiotics in aquatic world: Potential effects, the current status in Egypt and recent prospectives

(2015) Mai D. Ibrahem   Journal of Advanced Research

Occurrence and Dissipation of the Antibiotics Sulfamethoxazole, Sulfadiazine, Trimethoprim, and Enrofloxacin in the Mekong Delta, Vietnam

(2015) Chau Nguyen Dang Giang et al.   PLoS One

Use of plant extracts in fish aquaculture as an alternative to chemotherapy: Current status and future perspectives

(2014) M. Reverter et al.   AQUACULTURE

Dietary probiotics and prebiotics improved food acceptability, growth performance, haematology and immunological parameters and disease resistance against Aeromonas hydrophila in snakehead (Channa striata) fingerlings

(2014) Allah Dad Talpur et al.   AQUACULTURE

Effects of dietary levan on growth performance, nonspecific immunity, pathogen resistance and body composition of orange-spotted grouper (Epinephelus coioidesH.)

(2014) Mei-Ying Huang et al.   AQUACULTURE RESEARCH

Potential aquaculture probiont Lactococcus lactis TW34 produces nisin Z and inhibits the fish pathogen Lactococcus garvieae

(2014) Cynthia Sequeiros et al.   ARCHIVES OF MICROBIOLOGY

Dietary supplementation of Bacillus subtilis and fructooligosaccharide enhance the growth, non-specific immunity of juvenile ovate pompano, Trachinotus ovatus and its disease resistance against Vibrio vulnificus

(2014) Qin Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Prebiotics as immunostimulants in aquaculture: A review

(2014) Seong Kyu Song et al.   FISH & SHELLFISH IMMUNOLOGY

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

(2014) J. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

(2014) Luisa W. Hugerth et al.   PLoS One

Photobacteriosis: Prevention and Diagnosis

(2014) Francesca Andreoni et al.   Journal of Immunology Research

Systematic review: probiotics in the management of lower gastrointestinal symptoms in clinical practice - an evidence-based international guide

(2013) A. P. S. Hungin et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location

(2013) Bastiaan Star et al.   BMC MICROBIOLOGY

Factors influencing the grass carp gut microbiome and its effect on metabolism

(2013) Jiajia Ni et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of dietary supplementation of fructooligosaccharide (FOS) on growth performance, survival, lactobacillus bacterial population and hemato-immunological parameters of stellate sturgeon (Acipenser stellatus) juvenile

(2013) Reza Akrami et al.   FISH & SHELLFISH IMMUNOLOGY

Effects of dietary arabinoxylan-oligosaccharides (AXOS) and endogenous probiotics on the growth performance, non-specific immunity and gut microbiota of juvenile Siberian sturgeon (Acipenser baerii)

(2013) Zahra Geraylou et al.   FISH & SHELLFISH IMMUNOLOGY

Dietary galactooligosaccharide affects intestinal microbiota, stress resistance, and performance of Caspian roach (Rutilus rutilus) fry

(2013) Seyed Hossein Hoseinifar et al.   FISH & SHELLFISH IMMUNOLOGY

Combined effects of dietary fructooligosaccharide and Bacillus licheniformis on innate immunity, antioxidant capability and disease resistance of triangular bream (Megalobrama terminalis)

(2013) Chun-Nuan Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study

(2013) Christopher Quince et al.   GUT

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)

(2013) Xuemei Li et al.   PLoS One

Live feed is not a major determinant of the microbiota associated with cod larvae (Gadus morhua)

(2013) Ingrid Bakke et al.   Environmental Microbiology Reports

Effects of dietary chitosan oligosaccharides and Bacillus coagulans on the growth, innate immunity and resistance of koi (Cyprinus carpio koi)

(2012) Shimei Lin et al.   AQUACULTURE

Dietary microbial levan ameliorates stress and augments immunity inCyprinus carpiofry (Linnaeus, 1758) exposed to sublethal toxicity of fipronil

(2012) Sanjay Kumar Gupta et al.   AQUACULTURE RESEARCH

The effects of prebiotics on the digestive enzymes and gut histomorphology of red drum (Sciaenops ocellatus) and hybrid striped bass (Morone chrysops× M. saxatilis)

(2012) Maritza Anguiano et al.   BRITISH JOURNAL OF NUTRITION

Anti-infective properties of bacteriocins: an update

(2012) Riadh Hammami et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Effects of arabinoxylan-oligosaccharides (AXOS) on juvenile Siberian sturgeon (Acipenser baerii) performance, immune responses and gastrointestinal microbial community

(2012) Zahra Geraylou et al.   FISH & SHELLFISH IMMUNOLOGY

Preliminary Assessment of Dietary Mannanoligosaccharides on Growth Performance and Health Status of Gilthead SeabreamSparus auratus

(2012) Nejdet Gültepe et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

Multidrug-Resistance and Toxic Metal Tolerance of Medically Important Bacteria Isolated from an Aquaculture System

(2012) Juliana Alves Resende et al.   MICROBES AND ENVIRONMENTS

Baltic Salmon, Salmo salar, from Swedish River Lule Älv Is More Resistant to Furunculosis Compared to Rainbow Trout

(2012) Lars Holten-Andersen et al.   PLoS One

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Effects of dietary inulin and heat-inactivated Bacillus subtilis on gilthead seabream (Sparus aurata L.) innate immune parameters

(2012) R. Cerezuela et al.   Beneficial Microbes

Enhanced resistance to coldwater disease following feeding of probiotic bacterial strains to rainbow trout (Oncorhynchus mykiss)

(2011) David R. Burbank et al.   AQUACULTURE

Growth, survival and enzyme activity of lions-paw scallop (Nodipecten subnodosus) spat treated with probiotics at the hatchery

(2011) Andrés Granados-Amores et al.   AQUACULTURE RESEARCH

Influence of dietary administration of a probiotic strain Shewanella putrefaciens on senegalese sole (Solea senegalensis, Kaup 1858) growth, body composition and resistance to Photobacterium damselae subsp piscicida

(2011) Inés García de la Banda et al.   AQUACULTURE RESEARCH

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

(2011) Sébastien Monchy et al.   ENVIRONMENTAL MICROBIOLOGY

Dietary supplementation of fructooligosaccharide (FOS) improves the innate immune response, stress resistance, digestive enzyme activities and growth performance of Caspian roach (Rutilus rutilus) fry

(2011) Narges Soleimani et al.   FISH & SHELLFISH IMMUNOLOGY

Insights into antibiotic resistance through metagenomic approaches

(2011) Robert Schmieder et al.   Future Microbiology

Characterisation of the microbiota of Atlantic mackerel (Scomber scombrus)

(2011) Cecilie Smith Svanevik et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Effects of a prebiotic, Immunogen®, on feed utilization, body composition, immunity and resistance toAeromonas hydrophilainfection in the common carpCyprinus carpio(Linnaeus) fingerlings

(2011) Gh. Ebrahimi et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Viral metagenome analysis to guide human pathogen monitoring in environmental samples

(2011) K. Bibby et al.   LETTERS IN APPLIED MICROBIOLOGY

Bacteriophages with Potential for Inactivation of Fish Pathogenic Bacteria: Survival, Host Specificity and Effect on Bacterial Community Structure

(2011) Carla Pereira et al.   Marine Drugs

Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa

(2011) Peter A. Bron et al.   NATURE REVIEWS MICROBIOLOGY

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.)

(2011) Maartje AHJ van Kessel et al.   AMB Express

Effects of dietary prebiotics on growth performance, immune response and intestinal morphology of red drum (Sciaenops ocellatus)

(2010) Qi-Cun Zhou et al.   AQUACULTURE

The current status and future focus of probiotic and prebiotic applications for salmonids

(2010) Daniel L. Merrifield et al.   AQUACULTURE

Effect of Thymus vulgaris essential oil on intestinal bacterial microbiota of rainbow trout, Oncorhynchus mykiss (Walbaum) and bacterial isolates

(2010) Paola Navarrete et al.   AQUACULTURE RESEARCH

Use of macroalgae supplemented with probiotics in the Haliotis rufescens (Swainson, 1822) culture in Northern Chile

(2010) Fernando R Silva-Aciares et al.   AQUACULTURE RESEARCH

Effects of dietary prebiotics on the growth, feed efficiency and non-specific immunity of juvenile red drumSciaenops ocellatusfed soybean-based diets

(2010) J Alejandro Buentello et al.   AQUACULTURE RESEARCH

Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces

(2010) Steven Smriga et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of dietary supplementation of inulin and vitamin C on the growth, hematology, innate immunity, and resistance of Nile tilapia (Oreochromis niloticus)

(2010) Mai D. Ibrahem et al.   FISH & SHELLFISH IMMUNOLOGY

The study of some haematological and serum biochemical parameters of juvenile beluga (Huso huso) fed oligofructose

(2010) Seyed Hossein Hoseinifar et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus)

(2010) R.M.W. Ferguson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Metagenomic sequencing for virus identification in a public-health setting

(2010) S. Svraka et al.   JOURNAL OF GENERAL VIROLOGY

Evaluation of Natural and Commercial Probiotics for Improving Growth and Survival of the Pearl Oyster, Pinctada mazatlanica, during Late Hatchery and Early Field Culturing

(2010) Oscar L. Aguilar-Macías et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antibiotic resistance genes in water environment

(2009) Xu-Xiang Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biological approaches for controlling shellfish-associated pathogens

(2009) Max Teplitski et al.   CURRENT OPINION IN BIOTECHNOLOGY

The Intestinal Environment in Health and Disease – Recent Insights on the Potential of Intestinal Bacteria to Influence Human Health

(2009) Sam Possemiers et al.   CURRENT PHARMACEUTICAL DESIGN

Metagenomic analysis of viruses in reclaimed water

(2009) Karyna Rosario et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the intestinal microbiota of two Antarctic notothenioid fish species

(2009) Naomi L. Ward et al.   EXTREMOPHILES

Identification of genes for dimethyl sulfide production in bacteria in the gut of Atlantic Herring (Clupea harengus)

(2009) Andrew R J Curson et al.   ISME Journal

KocuriaSM1 controls vibriosis in rainbow trout (Oncorhynchus mykiss, Walbaum)

(2009) S.M. Sharifuzzaman et al.   JOURNAL OF APPLIED MICROBIOLOGY

New Insights into the Diversity of Marine Picoeukaryotes

(2009) Fabrice Not et al.   PLoS One

Quantifying environmental adaptation of metabolic pathways in metagenomics

(2009) T. A. Gianoulis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effects of dietary supplementation with mannanoligosaccharide, fructooligosaccharide or galactooligosaccharide on the growth and feed utilization of Atlantic salmon (Salmo salar)

(2008) Barbara Grisdale-Helland et al.   AQUACULTURE

Effects of prebiotics on nutrient digestibility of a soybean-meal-based diet by red drumSciaenops ocellatus(Linnaeus)

(2008) Gary Burr et al.   AQUACULTURE RESEARCH

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Effect of prebiotic xylooligosaccharides on growth performances and digestive enzyme activities of allogynogenetic crucian carp (Carassius auratus gibelio)

(2008) Baohua Xu et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Phylogenetic analysis of intestinal bacteria of freshwater salmonSalmo salarand sea troutSalmo trutta truttaand diet

(2008) Vesta SKRODENYTĖ-ARBAČIAUSKIENĖ et al.   FISHERIES SCIENCE

Efficacy of in-feed probiotics againstAeromonas bestiarumandIchthyophthirius multifiliisskin infections in rainbow trout (Oncorhynchus mykiss, Walbaum)

(2008) N. Pieters et al.   JOURNAL OF APPLIED MICROBIOLOGY

Oxytetracycline Treatment Reduces Bacterial Diversity of Intestinal Microbiota of Atlantic Salmon

(2008) Paola Navarrete et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Microbial levan in the diet ofLabeo rohitaHamilton juveniles: effect on non-specific immunity and histopathological changes after challenge withAeromonas hydrophila

(2008) S K Gupta et al.   JOURNAL OF FISH DISEASES

Immune Responses and Resistance againstVibrio parahaemolyticusInduced by Probiotic BacteriumArthrobacterXE-7 in Pacific White Shrimp,Litopenaeus vannamei

(2008) Jiqiu Li et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Paneth cells directly sense gut commensals and maintain homeostasis at the intestinal host-microbial interface

(2008) S. Vaishnava et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inhibitory activity of probiotics Streptococcus phocae PI80 and Enterococcus faecium MC13 against Vibriosis in shrimp Penaeus monodon

(2008) Sandip Madhusudan Swain et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Effects of inulin on gilthead seabream (Sparus aurata L.) innate immune parameters

(2007) R CEREZUELA et al.   FISH & SHELLFISH IMMUNOLOGY